Daphnia magna (water flea): 116932136
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Entry
116932136 CDS
T07514
Name
(RefSeq) nuclear pore complex protein Nup153 isoform X1
KO
K14296
nuclear pore complex protein Nup153
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03013
Nucleocytoplasmic transport
dmk03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116932136
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
116932136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116932136
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
116932136
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup153
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
116932136
NCBI-ProteinID:
XP_032795771
LinkDB
All DBs
Position
LG8:complement(7846112..7851885)
Genome browser
AA seq
1496 aa
AA seq
DB search
MWEDNLGKVKARRSKNSKPYERPKSILRRVTDSVTGLLPQPSWLVNWLQSTSPKKEDDEN
EEVEQEQPVPSTSSASNGGSSSYQEGVERESFIFRRPPGTFREQNSGRAVPDVPALDLFP
EPVVVESTSREQLVQTNGDDDSNSESTSGCSSLLPHPEHKRENRNVGEPLSINQSSLQII
GSSLSKSLAVDLKTNRGRKTLSLHTFGQESNLSVNATEESRFPKVIDETAVSFFDKEDTS
LNRSANKRDISLPQLSSFGSKRPRFNVTSFGPTAAEARRSLLNESVVDSPFYAGRTTYGG
ASAYRRAALQPSTTLFPYVRNRIQARPASVSSAPPTPSGSVSTTMSSSNVVLSSSAQRIL
QALEAMSTPVRDAKRIPATSISRRSVSSHDDELSFTGFGLSRRRPNLGPPTSKLSVGTPA
QIVARQAPTSIHPLESAAVSSTPISTQAGGKMRMRTSAPVRKSAPRIQEDEHNEIEELAA
VPMPLGLTSLPSFSLLPSLSVAPTQTVASSSVKTLASAGTSSNGLVNSAAISVSVSRPTF
TFSAPLVTVSSYEVETTTSSKPPSFNFSSPLLVKPATGKATEKGPVRAMELNLKSGSVLE
VLKEKTQDVASATETATSQIPATSGFGEKFKPPTDSWTCSVCCVTNPKSKTSCLACESPA
VASKPASTVPIAPKPTTSGFGDQFKMASTQWECSVCMVRNSDTDNRCKSCEEPRPGTKSA
VAPSAVSTFKFGVQPAQTSTKFGTESSSTSSQTTGFSFGLSNKKEDSSAGFKFGVPPEVP
KEVKETPGFKFGNTIEPKKVESVPVVASIEPAKTEKGGFKFGASIEPSKTTAEPIRGFKF
GNDKKTEETNVTTPIVSSESALKPIQLFGFKSSEPTTNKAEETNMVGQSLTSDSSAKSET
EPQIFKVPALVPQVATGISAAATTTTPASKASPIFSFGTAPVVPAPKTSLLETGSVMDIL
GKKPTAPLVVGQTPVTSAPTFSFGAGDQAKTSFSFGSGEKSTLKLGTGTTGKEAETSKSS
LLAPTTSSTSFNFTGAATSASSEALFKPTAAPTFNFGGPTTFGGVAASTATTFGVPSTTA
TSSAFGMKTAGTVATAFGLPSATTAPVAFGVPASTAAPTTFGLPAISTAATTFGLPTTSA
APTAFGLPTTSVAPTTFGLPPTSAAPTAFALPTTSAAPTAFGLPTTSAVTTAAVGSLVPS
SSSSIFTFGSTTGATTTSSSSSGFSFGLAPSSSQAPFSFGASAPPPYQFPKETPKLSSSS
VGGFGFGGPVTAATTSTTPAGSVFSFGSGNVASAAAAATPSEAPKLQFSFGTPQETATST
APSFGSFGASATTKTTAAPFMGFNSSTSSTPAFGEMATKSSVTPFGATPFGTLPPTGFGA
AATSSSSASPFSFGAQPSGATAPAPTFNAASSFNFGAPTVASPSVVPQQPTGLFQFGTAP
TPAVNSGFNFASSPGFTTPDAPSPGFASGFHGANPFDNTGSAGGPNRKIRKAVRRR
NT seq
4491 nt
NT seq
+upstream
nt +downstream
nt
atgtgggaagacaatttaggtaaagtcaaggcaagacggagcaaaaattctaaaccatac
gaaagaccaaagtcaattttaagacgagtaacggattcggtcaccggattattgccacaa
ccttcttggctggtcaattggttgcagtcaacatctcctaagaaggaagatgatgaaaat
gaagaagttgagcaggaacaacctgtgccgtcaacgagctcagcaagcaatggtggaagt
agttcttaccaagaaggagtggaaagagaatccttcatatttcgccgacccccaggaaca
tttagagagcaaaacagtggaagagccgttccagatgttcctgccttggacttgtttcca
gagccagttgtagttgaatcaacctctagggaacaattagttcagacaaatggtgatgat
gactctaactcggagtcaactagtgggtgttcctctttattaccccaccctgaacataag
agggaaaacagaaatgttggtgaacctctcagtataaatcaatcttcattacaaattatt
ggaagctcgttgagcaaatctttagctgttgacctcaaaaccaaccgtgggcgtaaaacc
cttagccttcacacatttggtcaagaatcaaatttgtctgtcaatgctacagaagaatct
agatttccgaaggttatagatgaaactgctgtctccttttttgacaaagaagatacttca
cttaatcgctctgcaaacaaacgagatatttcacttcctcagttatcgtcttttggtagc
aaaaggccacgtttcaatgtaacttcctttggcccaaccgctgccgaagcgagacggtcg
ttgttgaacgaaagtgttgtagactcgcctttttatgctggtagaacgacttacggtgga
gcttcagcttatcgccgtgcggccctacaaccgtctaccacattattcccatacgtacgg
aatcgaattcaggctagacctgcatccgtttcttcagctccacctactccaagtggttct
gtttcgacaacaatgtcatcatctaatgtggtactcagtagctcagcacaacgaattctt
caagcgcttgaagcgatgtctacaccagtaagagatgcgaagagaattcctgcaacatcc
atcagcagacggtcggtttcttcgcacgacgacgaactttcttttaccggattcggttta
agccgacgacggccaaatttgggacctccaacgtccaaactatctgttggtactccggca
cagatcgttgcccgacaagcgccaacaagtatccatccgctagaatcagcggcagtctcg
agtacccccatcagcacacaggctggtgggaagatgcgaatgcgaacgtctgcccctgtt
cgtaaatcagctccccgtattcaggaggacgaacacaatgaaatagaagaactcgcagct
gttccgatgcccctcggtttaactagtttacctagcttcagtttgctaccgtcactctcg
gtggcaccaacacaaaccgttgcttcctcttcagtgaaaacattagcgtctgcaggaacc
agttctaatggattagttaattccgctgcgataagcgtttcagtttctcgtccaactttc
acattttcggcgcccttggttacggtcagctcatatgaagtagaaacaacgacaagttcg
aaaccgcctagtttcaactttagttctcccctacttgttaagcctgctactggaaaggca
accgagaaggggcctgttcgggcgatggaattaaacttgaaatcaggtagtgtccttgaa
gtccttaaagagaaaactcaagatgtagcatctgcaacagaaacagccacttcacagatc
ccagcaacttcaggatttggagagaaattcaaaccgcccactgattcatggacgtgctct
gtctgttgcgttacaaaccctaaaagcaaaacttcatgtctagcatgcgaatctcctgcc
gtggcatcgaaaccagcaagcactgtacctattgcccccaagcctaccacaagtgggttt
ggcgatcaattcaaaatggcctccactcaatgggaatgttcagtttgcatggtcaggaat
tcggatacagataatcgatgcaaatcttgcgaggaacctcgcccgggaactaagtctgcc
gtcgctccatctgcggtttctacttttaaatttggcgtccaaccggcacagacaagtacc
aagtttggaacggaatcatcatcaacttcgtcccagacaacaggattctcgtttggatta
tcgaacaaaaaagaagattcttctgctggattcaaatttggcgtcccacctgaggtccca
aaagaagtaaaggaaactcccggatttaagtttggaaatacgattgaacccaagaaagta
gaatcggttcctgttgttgcatccattgaaccggccaaaactgaaaaaggcggtttcaaa
tttggtgcatcaatcgagccaagcaaaacaaccgcggaaccaattcgtggattcaaattt
ggaaatgataagaaaacagaagaaacaaacgttaccacccctatcgtgtcttctgagtct
gctttaaagcctatccagttattcggtttcaaatcgtccgaaccaacaacaaataaagca
gaagaaacgaatatggtaggtcaaagcttgacctcagattcttcggcaaaatctgaaaca
gaaccacaaatctttaaggtcccggccctcgtccctcaggtagcgacagggatcagtgct
gcagcaactactacaaccccagcctccaaagcgagccccatttttagctttggtacagca
cctgttgttccggctcccaaaacatccttacttgaaacgggcagtgtgatggacatccta
gggaaaaaaccaacggctcccttggtcgttggtcagacacctgtcacctcggcgcccaca
ttttcgttcggagcaggagatcaagcaaagacttcattttcgtttggcagtggagaaaaa
tctactctgaagctgggaacggggaccactggaaaagaagcggaaacttctaaaagttca
ttgttggcaccgaccacatcatcgacctcttttaattttactggagctgctacttcagca
tcttccgaagcgctgttcaaacctactgcagcccccacttttaattttggtggtccaact
acctttggcggtgtggctgcaagtacagcaaccactttcggtgttccatcaacgactgcc
acgtcttcggcgttcggtatgaaaactgccggaacggtcgcaacagcttttggtttacca
tcagcaactactgcacctgtagctttcggtgtgccagcctcaacagccgccccgacgacg
ttcggtttaccagcgatatcgacggctgctacaacttttggcctgccgactacttcggcc
gccccgacagctttcggtttgccgaccacttctgtcgccccaacaacttttggattaccc
cccacttcggcagctccgacggctttcgctttacccaccacttcggccgccccgacagct
ttcggtttaccaaccacttcggctgttactaccgctgcagttggatcgctggtgccgtca
agttctagttccattttcacgttcggttcaaccacaggagctactacgacgtcgtcgtcg
tctagtgggttttcgtttggcctggcaccctcatcttcgcaagcaccattcagtttcgga
gcctcagcaccaccgccgtaccaatttcctaaagaaacaccaaaactttccagcagcagt
gttggtggatttggatttggcgggcctgtaacagcagcaacgacgtcgacgacaccagca
ggaagcgtcttttcttttggatctggcaatgttgcatcggcggccgcagcagcaaccccg
tcagaggcacctaaattacagtttagctttggaacgcctcaggaaacagcaacgtctacg
gctcctagttttggatcttttggtgccagcgccactactaagaccacagctgcgccattt
atgggttttaattcgtcaacgtcttctaccccggcattcggtgaaatggctacgaaatct
tctgttactcctttcggagccacgccatttggtactttaccgccaacaggttttggagcc
gccgccacttcctcatcttccgcgtctccattttcatttggtgcccaaccttccggtgcc
accgctcctgctcctaccttcaatgccgcatctagtttcaattttggggcacccaccgtc
gcatctccttctgtagttccacaacaaccgactggtcttttccagtttggaactgctcct
acaccggcggtaaattcgggtttcaattttgcctcgtctccgggattcacaacacctgat
gctccgtctcccggatttgcttccggttttcatggagccaacccttttgacaacacgggc
agtgcaggtgggcccaatcgcaaaattcgcaaagcagttcgacgacgataa
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