Daphnia magna (water flea): 116932225
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Entry
116932225 CDS
T07514
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
dmk
Daphnia magna (water flea)
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116932225
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
116932225
3'-5' decay
Other 3'-5' decay factors
116932225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_30
ResIII
AAA_19
zf-CCCH
PAM2
UvrD-helicase
Bac_DnaA
PIF1
Mov-10_helical
DEAD
RNase_H2_suC
PhoH
AAA_22
AAA_16
zf_CCCH_4
Motif
Other DBs
NCBI-GeneID:
116932225
NCBI-ProteinID:
XP_032795919
UniProt:
A0A0P5B6B7
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All DBs
Position
LG7:complement(4408192..4415029)
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AA seq
1293 aa
AA seq
DB search
MALFDDEIPLNRNVINPVDRIELLSKFRAPPSGLTSEEFRLCKQFEKNNTCRLGSQCVEA
HGIDELNQWISFWNTLKNRITSELEKSTTCKTFLQKLHLDASKSDRSECMFASHLPFVEF
KLEENVSVTLSTKPAVTSWVIYLKSQEILQNIALLEDNYRENFFIQSVYTRESNVKHGHI
TKSRQEWNSTSCENLSTIVVTVKFKSNIYGSFNQAVIFDFGCKPYLSLHLRVEVYPANEG
FELSKDGKQLIVSSENRWTDENADIFRLPSSNLEDHCMELQRKYPQAGHKLKFPAAFETT
VLNHANYKERMHLLLCVEELAQARILSSFNLTGNVILTSNYILSPGPLSTAKYCTGENEL
FAKLELTYNISEDTPAGRLILNNCSVALISFGLDSQGKRRAYECVIEDKTKDAIYLRLNE
KLVTDFQLKHGSEFRVQAQFQLNRDVFCEKHWAIDLCTTKILFPDVSVSYRFDGQIPEMV
TKLNTQQQQAVAAIYSNPRQKRAPIVIAGPYGTGKTFTFAQCIKVILDQPDTRVLVCTHS
NSAADLYVKDYLHPMVQSGLKHYRPLRVFYKVRWLTTVHHSVIEYSLRETDPTKACSFRL
PKLSEIEQHRIVVTTLATTSYLLQAGVKKGYFTHILIDEAAQCTECDVLIPLSLADERTR
IALAGDHMQLSPEIFSQVAREQQFQVSLLERLYDRYPQDFPCRILLCENYRSHFAIVKFT
SELFYDNRLKSIGKNEQHAEFYPLTFRGAKGEDVQDPNSTSIYNMAEIYEIGEVVKKLQD
TWPHESWGSFDENSVGIVSPYSDQVSRIRVHLRHRKLFGVNVERVLNVQGKQFRVIILST
VRTRNTCVNEEKERKRRKCHFLQAGKDDHETEEEEENEEDEEAQFGFLSSARLMNTAVTR
ARSLVIVVGDPLALCSIGKCRKLWHRFIETCRDHNSLYGVLWMQLRAHLDALEMKKLYGL
NPMAPEFVPKVIRAGQSSRATSSTYSPSLIMSTQQYPMGLPPFCLPPPSTASATAGIPPF
PPPPFYQQQRFNPCSPHRQSQLNHSLATQPHKPRPRILPFSTKSPNYSNPHLPGPIVPPP
VANHSFGNFATSSNSTFSQLNSSFQNLHMSPRFSTSAHSQQLHEMNLFRGFDISYTGPLN
RDDSAEVGGTAHRAISKPLTVQQLEAALLKETQMSSKMESWPVSPGNESIWTPLSGPSLW
DGAVFSKEEEIKNDTVPLYLRTSNSNSQMSDDEMDLLVNSFVKPEEADSETDGDIPLWGL
ADVNLEPNEDIEVKTLQFEESVLRSLRKENLIE
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atggctttatttgacgacgagattccgttgaaccgtaatgtgataaatcccgttgataga
attgagttgttgagcaaatttcgcgcccctccgagtgggttaacttcggaagaatttcgc
ctttgcaagcagtttgagaaaaacaatacttgccgattgggttcccagtgtgttgaagct
catggaattgatgagttaaaccaatggatttctttctggaacacattgaaaaacaggatc
acttctgagttagaaaaaagcactacttgcaaaacatttcttcagaaacttcatttagat
gcaagtaaatctgacagatctgaatgcatgtttgcttcgcacttgccatttgtagaattc
aaacttgaggaaaatgtcagtgttacactttcaacaaaaccagctgttactagctgggtt
atatatctgaaatctcaagaaattctgcaaaatattgctttgttagaggacaattaccgt
gagaatttttttattcaaagtgtttacacaagagaatccaatgtgaaacatggccacatc
acaaaaagccgccaagaatggaacagcaccagttgtgaaaaccttagtactatcgttgtc
actgtcaaattcaaatccaacatctatggttcatttaatcaagcagttatctttgatttt
ggatgcaagccatacttgtcgctacatctaagggtggaagtgtatccagcaaatgagggc
tttgaattgagtaaagatggtaaacaattgattgtttcctctgaaaatcgatggactgat
gaaaatgctgacatatttcgattaccatcatctaatttggaagatcattgcatggaactt
caaaggaaatatcctcaggctggtcataagctgaaattccctgctgcttttgaaactaca
gtcctaaaccatgccaattacaaagagcgaatgcatttattgctttgtgttgaagagctt
gctcaagcaagaattctctcaagtttcaatttaacaggcaatgtaattttgacttcaaat
tatattttgtcacctggtccactatcaacagctaaatattgcactggggaaaatgagtta
tttgcaaaattggagctcacatataatatatctgaggatacaccagctggtcgtttgatt
ctaaacaactgcagtgtggcattgatatcctttggtctggatagtcaaggtaaacgaaga
gcgtatgagtgtgttattgaggataaaaccaaggatgctatctacttacgactaaacgaa
aaattggtcacggattttcaattgaaacatggatccgaatttcgggtacaagcgcagttc
cagctaaatcgtgacgtgttttgtgagaaacactgggctatagatctttgtactaccaaa
attctttttcctgatgtatctgtatcatacaggtttgatgggcaaattcctgaaatggtg
accaaattgaatactcaacagcagcaagctgtggctgcaatttattcaaatcctcgacag
aaaagagcaccaatagtcatagctggaccctatggcacgggcaaaacttttacctttgcg
caatgcatcaaggttattctggatcagccagacacacgtgtattagtgtgtactcactcg
aatagtgcagcggatttatacgtaaaagattatttacatcctatggttcaaagtggattg
aaacattatcgccctttgagagtattttataaagtcaggtggttgacaacggttcatcat
tctgttatcgagtattctttgcgtgaaaccgatcccactaaagcctgcagtttccgtctc
ccaaaattgagtgagatcgagcaacatcgaatcgtagtaaccacacttgcaactacaagt
taccttttgcaagctggcgtaaagaagggctattttactcatatcttaattgatgaagca
gcacaatgcaccgaatgcgatgttttaatccctctctctttggctgatgaacgcactcgg
atcgctctcgcaggtgatcacatgcaattgagcccagaaatcttttcacaagtagctcgg
gagcaacaattccaggtttctttgttggagcggttatatgatcgctaccctcaagatttc
ccctgccgaatacttctttgtgaaaactaccgatcgcactttgccattgtaaagtttacc
tcagaacttttctatgacaaccgtttaaaaagtattggaaagaacgagcagcatgccgaa
ttttacccgcttacatttcggggtgctaaaggtgaagatgtacaggaccctaacagtaca
tcaatttacaacatggcagaaatctatgaaatcggtgaagtggtgaaaaagttgcaagac
acatggcctcacgagagctggggttcttttgacgaaaactccgtcgggatcgtaagtcca
tattcagatcaggtatcccggatacgcgtgcatctccgtcaccggaagctctttggtgtc
aacgtagagagagttttgaatgttcaaggtaaacagttccgcgtcataatattgagcaca
gtgcgaacacgcaatacctgcgtcaatgaggagaaagaacggaagcgccgaaaatgccat
tttctgcaagcggggaaagacgatcatgaaactgaagaggaggaggaaaatgaagaagac
gaagaagctcagtttggcttcttgtcatcagctcgcctcatgaatacagccgtaacacga
gcacgcagcctggtgatagttgttggagatcccctagctctgtgctcgattgggaaatgc
aggaaattgtggcatcgttttattgaaacgtgtcgcgaccacaattcactttacggagta
ttgtggatgcaattacgtgcacacttagacgcccttgaaatgaagaaactttacggattg
aacccgatggctcccgaattcgtcccaaaagtaatacgcgctgggcagtcatctcgagct
acgagctcaacgtattctccaagcttgattatgtcgacacagcagtaccccatgggattg
ccccctttctgtttgccacccccatctactgcttctgcaactgctggcattccgcctttc
ccaccaccacctttttatcaacagcagcggtttaatccgtgtagcccacaccgtcaatct
cagttgaatcattctctagcaactcagccgcacaaaccgaggcctcgcattcttccgttc
agtacgaaatcacccaactatagtaatccacatctgcctggaccgattgttcccccgcca
gtggccaaccattcgtttggtaactttgctacgtcgtccaattcaacgttctcacagctc
aattcctccttccaaaatctgcatatgtcaccaaggttttcgacgagtgcacacagccaa
caactgcatgaaatgaatctattccgtggtttcgacatttcgtatactggtcccctgaac
cgcgatgattcggccgaagttggtgggactgcacacagagctatctccaaaccactaacc
gtccaacagctggaggctgccctcttgaaagagactcaaatgtcgtctaagatggagtcg
tggccagtatcacctggcaatgagtctatttggacacccctcagcggtccgtcgctgtgg
gacggtgcggttttctccaaggaggaagagatcaagaacgacactgtacctctgtattta
cgcacgtcaaatagtaacagccagatgtcagatgacgaaatggatttgttggtgaactct
tttgttaaacccgaagaagctgattctgagacagatggagacatcccgttatggggtttg
gcggacgttaacttagagccgaatgaggatatcgaagtgaagaccctgcagtttgaagaa
tcagttctccgctcacttcgaaaagaaaatctgattgagtaa
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