Daphnia magna (water flea): 116932357
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Entry
116932357 CDS
T07514
Name
(RefSeq) DNA mismatch repair protein Msh3 isoform X1
KO
K08736
DNA mismatch repair protein MSH3
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
116932357
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dmk03400
]
116932357
DNA repair and recombination proteins [BR:
dmk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
116932357
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
TniB
MutS_II
Dynactin_p22
Motif
Other DBs
NCBI-GeneID:
116932357
NCBI-ProteinID:
XP_032796036
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All DBs
Position
LG10:8408573..8412875
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AA seq
1019 aa
AA seq
DB search
MKRQRAKSTVKNQQVKISKFFHVATPRTDLMNNVVTEENTGKLSKPMKVDIPFGISILQN
ELCDAIAERSNPSGPSSGILKLRKFVHSENSNSDEETSEKIETETPSSWLTATMRSNHQS
MPATISTSSSNHDKCSLKLTPLEQQIVALKEEHPELLLVVECGYKFQLFGEDADRAGTIL
NMVAYKKNNFLSCSFPLHRLLVHVKKLVAHGCKVGIVRQKETAALKAIGDSKHAPFKRKL
DMVYTKATFISDDDCDGVVDTLSVDIPLCMVFLAEAYAKTDGTVAQMGILAFFTQDSTVV
FDHYQDDCVRSSLESTCTLTHLQPSEIVLPDRCVSDQTLNLIRQFSTHKLSSGDCIRTEF
TSRLDWTCASELLLKVYCDDAEMVDKLKELPPVIVCCLAMAYNHLKEFKLEQLVSAIKNV
KPYEAFRDDVLQMDGNCVRNLNLVPLTNEAGPRLAGSVFHIVNRTRTKFGARLLRSWLLR
PLAKRASIESRLEAVEWFVTHCDDPEIAPLKKLLKTLPDLEKQLTAVLHTRSKPEEFFAL
CKSWEQIKILSTQLQSHYQETSPSSLKLLLETVITSLATVHLYAEQLNEVAVTSKEKTRL
FNRTDDYPQVAVLMEKIDQTESQLHALKPSICKTIGILAMNYVTVSGDEYLIEVKNALVR
AVPATWIKISATKQCCRFRSPEVQQLFGELCCFRELLKIAADDAWLRFQRQVATTSHTVF
KKANTAIATLDCLIALAEVAKSENYTRPTFVEEAGVLDISQGRHAILSRLIQQTSSIAEY
VANDTKLNSDGVRCMIITGPNMGGKSCLLLQVGIIVVLAQVGSFVPAKQASLSIFKSIFI
RMGLHDEIYAGRSTFFMEMMETSAILRRCTTRSLVIIDELGRGTGTHDGSAIAFATLKYL
VEEVKCLTLFVTHYPAVVQLQSDTPNNVANYHMGYLLEDAAADNVEKRDGDNQELVFLYT
LTLGTCPKSFGLNVARLAGFQSSITARAKFKSESFFSNAESQRCQVAELKNIFYRNNSE
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgacaaagagctaagtctaccgtaaagaatcaacaagtgaaaatatcaaagttt
ttccacgtcgccactcctaggactgatttgatgaataatgtggtgacggaggaaaatact
ggcaaactttcaaagcccatgaaggttgacattccatttggtattagcatcttacaaaat
gaactgtgtgatgcaattgcagaaagaagcaatccaagtggaccttctagtggtatacta
aaacttcgaaaatttgttcattcagagaacagtaactcagatgaagagacaagtgaaaaa
atagaaacagaaaccccatcttcatggctaacagccactatgcgttccaatcatcagagt
atgccagcaaccatcagcactagctcgtcaaatcatgacaaatgcagtctgaaattgact
cctctggaacaacaaattgttgctctaaaggaggagcatcctgaacttctgcttgtggtt
gaatgtggttacaaattccagttatttggagaagatgctgatagagctgggaccatattg
aacatggtggcatataagaaaaacaattttcttagttgcagttttcctctccatcgcctt
ttagttcatgttaagaagttagtcgcacatggatgcaaagttggaatcgttcgtcaaaaa
gaaaccgccgctttaaaggcgattggcgattcaaagcatgcgcctttcaaaagaaaattg
gatatggtctacactaaagccacatttatcagtgacgatgattgtgatggtgtcgttgac
actctgagtgtagacattccgctctgtatggttttcctggctgaagcatatgccaaaaca
gatggaacagtagctcaaatgggaattttagcgtttttcacgcaggatagtacagtcgtt
ttcgatcattatcaagatgattgtgttcggagtagcttggaaagtacttgtactttgacg
catcttcagccatctgagatagtgctgcccgaccgatgcgtctctgatcaaacgcttaac
ttgattcgtcaattttccactcacaaattgtctagcggagactgcattcgcacagaattt
acgtcacgtcttgattggacctgcgcctcggaactgcttttaaaagtttattgcgatgat
gcagaaatggtggacaaattgaaagagctcccccctgtcattgtgtgctgccttgcaatg
gcctacaaccacttgaaagaatttaagttggagcagttagtaagcgccattaagaacgtg
aagccctacgaagcttttcgagacgatgttttacaaatggatggaaattgtgtgcgaaat
ttaaatctggtccccttgacaaatgaagctggtccccgacttgcgggttcagtgtttcat
attgttaatcgaactaggacaaaatttggggccaggcttttacgttcttggctgttacgt
cctctggctaagcgtgcttccattgaatcaagattagaagcagtggaatggtttgttacg
cattgtgacgaccccgagatagcaccgttaaaaaagttgcttaaaactctaccagatttg
gaaaagcaactaactgcagttcttcacacaaggtcgaagccggaagagttctttgctctt
tgcaaatcttgggagcaaatcaagattttgtccacccaactccaatctcattaccaggaa
acttccccttcgtcattgaaactcttgttagagacagttataacttcactagcaacagta
catctctatgccgagcaattgaatgaagtcgctgtaacttcaaaggaaaaaactcgatta
ttcaatcgtaccgatgactatccgcaagtggctgtgctaatggagaagattgatcaaact
gaaagccaacttcatgcattgaaaccgtctatttgcaaaacaatcggtatactggcgatg
aattatgtaaccgtatcaggagatgaatatttaattgaagtgaaaaatgccttggttcga
gcagttcctgcaacatggattaaaattagcgcgacgaagcaatgttgccgatttcgcagt
cctgaagtccagcagctttttggagaactatgttgcttcagagagttgttaaaaattgct
gcggatgacgcgtggcttcgatttcaacgtcaagtggccaccacgtctcacacagttttc
aaaaaagctaacacagctattgccacgttagattgcttaatagctctcgctgaagtggca
aaatcagagaattacactagaccgacgttcgtggaagaagccggggtacttgatatttca
caaggacgccacgcaattttgagccgccttatccagcaaacttcctcaattgctgaatat
gttgcaaatgacacaaaactcaacagtgacggcgttcgttgcatgatcatcaccggacca
aacatgggtggaaaatcctgtctactcttacaagtgggaatcatagttgtcctggctcaa
gttggttcctttgttccagccaaacaggcaagtctcagtattttcaaatcaatttttatc
agaatggggttgcatgacgaaatatatgcaggcagaagcacgttttttatggagatgatg
gaaacgtctgccattctccgtcgttgtacaacacgctctttggttatcatcgatgaattg
ggtcgaggaacaggaacccatgacggcagtgccatagcgtttgcaactcttaaatatttg
gtggaagaggtaaagtgtctaacgctttttgtaacgcactacccagcagttgtccagtta
caaagcgacaccccaaacaacgtggccaattatcatatggggtatttgctggaagatgcg
gctgcagataatgtagaaaaacgtgacggcgataaccaagaactggtcttcttgtatacg
ttgactctcggaacctgccctaaaagttttggtttaaatgttgctcgtcttgccggcttt
cagtcgagcattactgctagggctaaatttaagtcagaatcgttttttagtaacgcggaa
tctcaacggtgtcaggtagctgaactgaaaaacatcttttacagaaataatagtgagtaa
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