Daphnia magna (water flea): 116932558
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Entry
116932558 CDS
T07514
Name
(RefSeq) zinc finger SWIM domain-containing protein 8 homolog
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
dmk
Daphnia magna (water flea)
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dmk04121
]
116932558
Ubiquitin system [BR:
dmk04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
116932558
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-GeneID:
116932558
NCBI-ProteinID:
XP_045036303
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All DBs
Position
LG10:773630..783549
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AA seq
1860 aa
AA seq
DB search
MLEWMEEGDRMSFDDSDRFEEDSLCSWGSEPESLCNNWRGWKKPLIVTTSISSPLLASNQ
RRAEDGSVLSLSELCSRVVAAHIAFEVVEQAWQPVPEPLQLRIAFWSFPDNEEDIRLYSC
LANGAADEFNKGENLYKSRAVKEPLQIGFHLSASVVSPSQQTAQGKSNTFNVAVTFDRRR
ITSCNCTCASRAFWCAHVVAVCLYRIHQSHLVTLRAPVSESLSRLQRDQLQKFAQYLISE
LPQQILPTAQRLLDELLSAQPSAINTVCGAPDPTAGASASEQTSWCLDENTLHENIRKIL
IKFCVPSPTVFSDVNYLSSTAPPAAAEWSSLLRPLRGREPEGMWNLLSIVREMFKRHDRN
AVPLLEVLTEEIMSCEQIMVWWFNTKVALHNGSAAGYGSGIKSSNLGSQSQASQHACSSL
CDEVVILWRLAALNPGLSGEERDLLRQQFSEWHVKVIDKVTKSKGLTISATHGAPHVAGG
NGAGPSTPRRTSQSFKAEVEVFTGFKPSVEACYLSWDDYPVPGVTYTQGHRLYHCPFTCF
RHTEAHGRFDIGPINSSSAVITNDLPVHMLQRRAVVQGDYAQAMDDIRHERERIGGFHPA
SPLVRPEREIDQAGNRSSVSSEGFCENEGDPAVEAFEPAVPSGLRDLTRQDSDDPALGSD
TNEPEVLAVDSCTSTDKEKSSPEDFDADSDWSGVDARLKNSRLEASGGVLLPSGSALVAG
SSRDTDEMASLSASPREFRTMALPAAQGAVPREPCVVTVPNRSGGVFGELKPLDDPLEIL
FARAEGLHAHGHSAEACELGIQLATELLANPPDLLVELPPIITKNGKKKKTNPACHQISC
LASATLAKCAFLCTVLAENSDYYHLAFRVGMFGLELARPPATTKPLEVKLAHQESELVTL
LKRIPLGHPELSILREKAEQLRDGILRSRGDALLPLSLATFIFEALVTASGAQQVRAPFY
STHRLPTDETLGFEAAVSALGLKANVSEADHPLLCEGTRRQRGDLAVMLLVHYKDDPDKL
AKIMEKLLDRQVHPLYKAPLLSSFYTNNPTPMGQTSSSSRQVRQRREGIEAGMIAVSLDA
NSPPHAACPSQSSGGATASNTIRGHSPSWEEDYAQWQAGHGARLESNTGDTASGNDAAIS
HRQMMNAARNRSLTHRSQRQPGPGSDSGSSGSGKSSGSDSFGSRGPMNQPPPPNCTGVSP
SLSDGSMGGAIGSSIPLNNLASRQPQQQASIPEMGGLVNGGASFSRNSGVMGPCGGKINR
FKNKRLYPSVPNQPSEASAHFMFELAKTVLLKAGGNSSTSLFTQPINSQNPRGPIRALQM
CAFQIGLYALGLHNCVSAKWLSRTYSSHVSWITGQAMEIGSQALWFLISTWEGHLTPPEV
ASIADRASRGHEANMVRAAAELALSCLPHAHALNPNEIQRAILQCKEQSSEMLERACLAV
ESAAKGGGVYPEVLFRVARCWHELYEQRMPSARRGARVLPSIEQPPPPIPLHVPQCSMQQ
PQANMAGVGVPVPYAMTSIVPFPLAYSFLPGTAPGPNPPAQIPGVPVNFLAANGAGGATP
NATFSYAPPIPGLQYFPSVTCPMPMGATSAPPNPPPGPSPLMPMSVGPAQGTNNRPPPPI
PPPGCPVTLQPLIHTSNSTTHQAPPLFVQQSQANSVRSPPTATGALPNQALTPTQLHFLL
AAYRVGIVALETLGRRAHDDRPQARYSRNPPYGEDVKWLLSVAKKLGTDYLQQFCVVTVN
SVVSPFVLHEIAVEAAHFFAYTGSSPPNPYMQHLRSRVLTPLIQKCHQMYIQCINHKLYH
LNPTDYDDFLTIIQTARTAFHLIPTGPMQFNEFLQSIQKSKSCTKDLWGRLMAIIRQPAV
NT seq
5583 nt
NT seq
+upstream
nt +downstream
nt
atgttggagtggatggaggaaggagaccgcatgtcatttgatgactcagaccgttttgaa
gaagattctctttgtagctggggcagcgagcctgaatctctttgtaataactggagagga
tggaagaaacccttaattgtcaccacatccataagctcaccactgttagcttctaatcaa
cgaagagctgaagatggaagtgtgttgtcgctctcggagctgtgctcccgtgttgtggct
gctcacatcgccttcgaagtagttgaacaagcttggcaacccgtacccgaaccactccaa
ttgcgtatcgccttctggtcgttcccggacaatgaagaggacattcgcctatactcctgc
ctggccaacggtgcagctgatgagttcaacaagggcgagaatctctacaaaagcagagcc
gtcaaagaacctcttcagattggttttcatttgagcgcctcggttgttagtcccagccaa
cagacagcccaaggtaaatctaatacctttaatgtggccgttacgtttgatcggagacgc
atcacatcatgcaactgcacttgcgcttcgcgggctttttggtgcgcccatgttgtcgcc
gtctgtctttatcgcattcatcagtctcatttggtgacacttcgtgctcccgttagcgag
tctctaagtcgtttgcaacgcgaccagcttcaaaagttcgctcagtatcttattagcgaa
ctgcctcaacaaattttaccgactgcgcagcgtctgctcgatgaacttctttcggcccag
ccatctgcaatcaatacagtttgcggtgcacctgatccaactgcgggtgcgtcagctagt
gaacagacatcatggtgcctcgacgaaaatacacttcacgagaatattcggaaaatcctc
attaaattttgcgtaccgtcgccgacggtattcagtgatgtgaattacttgagctcgacc
gcgccccccgcagcggctgaatggagcagcctgttgcgcccattaagaggtcgggagccg
gaaggcatgtggaacttgctttccatcgtccgcgaaatgttcaaacgccatgaccgcaat
gccgttccacttttggaggttttaacggaagagatcatgtcgtgtgaacagattatggtc
tggtggtttaacaccaaggtggcgttacacaatggaagtgcagctggatacggtagcggt
atcaaatcaagcaacttgggaagccaatcgcaagcatctcagcacgcttgctcttcttta
tgtgatgaagtggtcatcctttggcgattagctgcactcaatccaggcctttctggggaa
gagcgcgatttacttcgtcaacagttcagcgaatggcatgttaaagtaattgacaaagtc
acgaaaagcaaagggttaacaatcagtgctactcatggcgcacctcatgttgctggcgga
aatggtgccggaccgtccactcctcgtcgtactagccaatcatttaaagcagaagttgaa
gtgtttactggcttcaaaccttcagttgaagcctgttatcttagctgggacgattacccc
gttcccggggttacctacacccaaggtcaccgtctttaccattgtccttttacctgcttt
cgacacacagaggctcatggtcgctttgatatcggccccatcaattcctcgtcggccgtc
attaccaatgacttgcccgtccacatgcttcaaagacgagcagtagtgcaaggcgattat
gcccaggccatggacgacatacgtcacgagagggaaaggataggcggattccaccctgca
tcacctcttgtccgaccggaaagagaaatagatcaagctggcaatagaagcagcgttagt
agcgaaggtttctgcgaaaatgaaggcgatccagcagtcgaagcgtttgaaccagcagta
ccttcaggtctgcgggatctaacccgccaagacagcgacgatccggctctgggttctgat
accaacgaaccggaagtcttggcggtggatagttgcacttcgaccgataaagaaaaatca
tcacctgaagattttgatgctgactcagactggtcgggagttgatgctcgtttaaagaat
tcgcgacttgaagccagcggtggggtgctacttccttctggatcagcattggtagctgga
tcttcacgagatactgacgaaatggccagtttgtcagccagtcctagagaatttagaaca
atggccttacctgcagctcaaggcgccgtgccacgagagccttgcgttgttaccgttccg
aaccggagcggtggagtctttggagagttaaagccattggatgatccactagagatcctt
ttcgcaagagcggagggacttcatgctcatggacatagtgccgaagcttgtgaattgggc
atacagttggcgacagaacttttagcaaatccacccgatttgttggtcgagttgcctcct
attatcacaaagaatggcaagaaaaagaagacgaaccctgcttgtcatcagatcagctgt
ttggcttcagcaacgctagccaaatgcgcctttctctgcacagttttggcggaaaattcc
gactattaccatctcgccttcagagtaggaatgtttggattggaattggcacggccacct
gccaccacaaaaccattagaagtgaagttggctcaccaagaatctgagttggttacgcta
ttgaagcgaatacctttaggtcatccagaattgtcgatattgcgtgaaaaagctgaacaa
ttacgagatggcatattacgatcaagaggcgatgctttgttgccactttcacttgctacg
tttatattcgaagcattggtcactgcatcaggagcgcagcaagttcgtgctccattttat
tctactcatcggcttccaaccgatgagactcttggcttcgaagcagccgtctccgccctg
ggattgaaggcgaatgtatcggaagcggaccatcctctgctttgtgaaggaactcgtcgc
caacgaggtgatctcgctgtcatgttgcttgttcattacaaggacgatccagacaaacta
gccaaaataatggaaaagctgctggatcgtcaagttcatccgctgtacaaggcaccgctt
ctgagcagtttctacactaacaatccgacacctatgggtcagacatcttccagcagtcga
caggtgcgtcaacgtcgtgaaggcattgaagctggaatgattgccgtttcgcttgacgcg
aattcacctccacatgcggcctgcccttcccagtctagtggaggagctactgcttcgaat
acaatacgtggacatagtccttcttgggaagaagattatgctcagtggcaagcggggcac
ggtgctcgtctggaatcgaacactggagacacggccagtggaaacgatgctgcaattagc
catcgtcaaatgatgaacgcagctcgcaaccgaagtctaactcatcgctctcagcgacaa
ccgggtcccggttcggattccggtagctcgggctcaggaaaatcatcaggatcggatagt
tttggatcaagaggtccaatgaatcaacctccccctccgaattgcacaggagtgtcaccg
tctttgtctgacggctcgatggggggagcaattggctcatcgattcctttaaataattta
gccagtcgtcaacctcaacaacaggcatccatccctgaaatgggcggcctagtaaatggt
ggagcctctttttcgagaaatagtggagtcatgggaccttgtggggggaaaatcaatcgc
tttaaaaacaagcgtctttatccttcggttcccaatcaaccatctgaagcgtcagcccat
ttcatgtttgaattggctaaaacagtccttctgaaagccggaggaaatagtagtacatcg
ctcttcacccagcccatcaactcacaaaatccacgcggtcccatccgagcactgcagatg
tgcgcgttccagattggtctctatgccttgggtcttcataattgcgtcagcgccaaatgg
ttgagccgcacttattcttctcatgtctcctggattacaggtcaagctatggagattggt
tcgcaagccctctggttcttgattagtacctgggaaggacatttaacccctccagaagtg
gcaagtatagccgatcgagcgtctcgtggtcacgaggcgaatatggtccgagcggcagca
gagttggccctttcttgcttgccacatgcgcacgcattgaatcccaacgaaattcagcga
gctatactgcaatgcaaagaacagagtagcgaaatgctggaacgtgcatgtctggccgtc
gaaagcgcggctaaaggaggtggagtctatcctgaagttctcttccgcgtagcccgttgt
tggcacgagttgtacgagcagcgtatgcccagtgctcgtaggggtgctcgggttttgccc
agcatcgagcaaccgccgccaccaattccgctacatgtgccacagtgttccatgcagcag
cctcaagccaatatggccggcgtcggtgttccggtgccatatgctatgacatctattgtt
ccctttcctctagcttacagtttccttcctggtactgctcctggaccgaatccacctgct
cagattccaggcgttcctgtcaattttttggcggcaaatggagctggcggcgccactccg
aatgcgacgttttcgtatgctcctcccataccaggtctgcagtactttccttcagttacg
tgtcccatgccgatgggagcgacatcagcgcctcccaatcctcctccaggtccttctccg
ttaatgccaatgtcagttgggccagctcaagggacgaataaccgcccacctcctcctata
ccccctccgggttgtccggtcacgctccagccgctcattcacacgtccaacagtacgacg
catcaagctccacctctatttgtccaacagtcgcaagccaactcggtccgatctccccca
acagccaccggagctttgcctaatcaggcactcactccgacgcagctgcattttcttttg
gcggcctatcgagttggaattgtagctctggaaacccttggaagaagagctcatgatgac
cgtccgcaggctcgctattcgcgtaatccgccctacggtgaagatgtcaaatggcttctc
tctgttgctaagaaacttggaacggattacctccagcagttctgtgtcgtgacggtgaac
agtgttgtaagcccatttgtactccatgagattgctgtagaggcagcccatttcttcgcc
tacactggatcatccccacccaatccgtatatgcagcacttgcgttcgcgagtcctgacg
ccacttattcaaaagtgtcatcaaatgtacatccagtgcatcaaccacaagctttaccac
ctcaatcctaccgattacgatgactttctaacgataattcaaacggcgagaacggctttt
cacctcataccaacgggaccgatgcagttcaatgaatttctgcagtccattcaaaagtcg
aaatcctgcaccaaagacttatggggtcgtctaatggccatcattcgtcaaccagccgtt
tga
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