Daphnia magna (water flea): 116933025
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Entry
116933025 CDS
T07514
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116933025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmk03019
]
116933025
03012 Translation factors [BR:
dmk03012
]
116933025
Enzymes [BR:
dmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116933025
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
116933025
Translation factors [BR:
dmk03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
116933025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
HA2_C
OB_NTP_bind
DEAD
HA2_N
nSTAND3
ATPase
AAA_14
AAA_19
AAA_22
AAA_11
NPHP3_N
Viral_helicase1
NACHT
ResIII
PhoH
DUF3885
CoA_trans
T2SSE
Motif
Other DBs
NCBI-GeneID:
116933025
NCBI-ProteinID:
XP_032796815
LinkDB
All DBs
Position
LG10:complement(9260362..9263804)
Genome browser
AA seq
980 aa
AA seq
DB search
MEKKNITQDISQLTLLCPLDNKLPPKKSSPQRGLKILREKAMKKKEGNPKKQLDGKAKGL
WDAARTRKNLIENEKSIVKVAQYANEKFEGFFQNYAPVTVILSEANWRSKYETLDDSPFR
KKFLDILEGNDTLHSGLKKDKNEEMSNILASLVKLDEKLFEEFLCKISNEEFQKVLELRK
KLPVWSQKEDIVKAIKDNQVVVISGATGCGKTTQICQFLLDQAIESRSGSTFCALCTQPR
RLAAISAAHRVAEERVEVCGDPRSSVGYQIRLERLNPRERGSILFCTTGILVQLLISDPL
LEKYSHILLDEVHERDLLTDFILTVVRDLLPKRPKLRVILMSATINSNLLSEYFNNCPVL
NIAGRSFPVETVYLEDILSKLDFRFRSTRNRSGADSHPNHLDIEYNQIMAPFVEEMEANH
SYPFHVLKSLRKRESEESPEMLIMALLKHICAREADGAILIFFPGWEQIKRLNKLLLSDR
TFSSRKFLIFTLHSMLPTFNQRQIFEKPPRGVRKLILSTNIAETSLTIDDIVYVIDCGKA
KLPNFDPLKKLNTLNSEWIALANAHQRQGRAGRTKPGICYKLYSRGRESTFVPHALPEIK
RTRLEELILRVKILKLGQVQAFLRKVPEPPDDLTVKISLELLHELGALDDAECLTPLGFH
LAQLPTDPSTGKLILLGAIFGCLEPMLAIAATLSFKDPFVMPLNQEDNYRKRRKFLAEKL
FSDHLLIAKVMHDFRAAQLDGHVAAKNYCHENFLSTSTMTMLSNMMEQFCRDLRERQFLS
NSASISDPVANINSKNHPLILAVLCAGLLPNVAEVVIAGRSLPKRNLPKIPTSPVKVKTP
EDGPVLIHPRSINYDTVFAKSTWLCYHGKVKSSNSIYLQDCSIVPPLAVLFFGDEKLFNK
KDAKLSKRFGYKWDSSTMEATRSLRTCWDNYLCHRVSHPGATDWSSDSTDSALLRAIIHF
TTATVVSLNEDTGLLSVAHE
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atggagaagaaaaatattacccaagacatcagtcagttgactttgttgtgtccacttgac
aacaaacttcccccaaaaaaaagtagtcctcagcgtggcttgaaaattttacgagagaaa
gccatgaagaaaaaggaaggaaatcctaagaagcagcttgatggaaaagctaaaggttta
tgggatgcagcaagaacaagaaaaaatctaattgaaaatgaaaaatcaatagttaaggtg
gcacaatatgcaaatgaaaaatttgaagggttttttcaaaactatgcaccagtaacagtt
atattgagtgaagcaaattggagaagcaagtatgaaactttggatgatagcccattccga
aaaaagttcttagatattttagaaggaaatgatacccttcattctggactgaaaaaagac
aaaaatgaggagatgagtaacattctagcaagccttgttaaacttgatgaaaagctattt
gaagagtttttgtgcaaaatttcaaatgaagaatttcaaaaggtattagagttgagaaaa
aaactacctgtttggagccaaaaagaagacattgtgaaagccatcaaggataatcaagtt
gttgtcatcagtggagcaactggatgtggaaaaaccactcaaatttgtcaatttttgtta
gatcaggctattgaatcaagatctggatcaactttctgcgccctatgtactcaacctagg
cgattagcagcaatatctgctgctcatcgagtagctgaagaacgggttgaagtttgcggt
gaccctaggagctctgttggctatcaaataagattggaacgactaaatccccgagaaaga
ggatcgattcttttttgtacgacagggattctagtgcagctactaatatcagatcctctt
ttagaaaaatattcccacattttactggatgaagtgcatgaaagagacttgctgactgat
ttcatcctgactgtcgtgcgtgatctccttccaaagcgtccgaaattgcgtgtcatcctc
atgagtgccaccatcaattcaaatcttttgtcagagtactttaataattgcccggtgctc
aatattgctggcagaagtttcccagtagaaaccgtgtatttggaagatatccttagcaag
ttggactttcggtttcgttcgactcgcaatagaagtggagcggattctcatccaaatcat
ttggatatagagtacaaccaaataatggctccttttgttgaagaaatggaagctaatcac
agttatccgtttcacgtattgaaatccttacgaaaaagggaatcagaagaatcccctgaa
atgttgattatggctctactcaaacacatttgtgcacgagaagctgacggtgctattctc
atcttttttcctggctgggaacaaatcaaaagactgaacaagctattgctgagtgaccga
actttttctagtagaaagtttttgatttttaccctgcattcgatgttacccacttttaac
caacgtcagatcttcgagaagccacctcgtggagtacgcaaactaatactatccacaaac
attgcggaaacgagccttaccatcgatgacattgtgtacgttatcgattgcggcaaggcc
aaactaccgaattttgatcccctaaagaaactgaatactcttaattccgaatggattgcg
ttagctaatgctcatcaacggcaagggcgtgcaggtcgcacaaaaccaggaatttgttac
aaattgtacagtcgtggtcgtgaatcaacttttgttcctcacgctttacctgaaattaag
aggactcgactagaagagctaatattacgagttaaaatactcaaacttggtcaagttcaa
gcctttctccgcaaagtacctgaaccgcctgatgacctcacggtcaaaattagccttgaa
ttactgcacgaactaggagcgttagacgatgctgaatgcctcactccactgggttttcat
cttgcccagctaccaaccgatccgagcactggaaaactcatccttcttggagccattttt
ggatgtctggagcctatgctagcgattgctgctacattgagtttcaaagatccctttgtg
atgccactaaatcaagaagataactaccgaaagagaaggaagttcctagccgagaaattg
ttttctgatcacctgttgatcgccaaagtgatgcatgattttagagcagctcagctagat
ggccatgttgctgcaaaaaactattgtcatgaaaattttctaagtactagcaccatgacg
atgctttcaaatatgatggaacaattttgtcgtgatctccgtgaacgccagtttttgagc
aacagtgcatccattagtgatccagttgccaacatcaactccaagaaccatccccttatt
cttgcagtcctttgtgctggcctattgcccaatgttgcagaagtagtaatagccggccgt
agtttaccgaaacgtaatttacccaaaattcctacgtcacccgtgaaagtgaaaacaccc
gaagatggtccagtattaatccaccctcggtcgatcaactacgacactgtttttgctaaa
tctacatggctgtgttatcacggcaaggttaaaagtagtaattccatctatctgcaggat
tgctcaatagttccacctctggcagtgctcttctttggagatgagaaacttttcaataaa
aaagatgccaaattgagcaaacggtttggatacaaatgggattcttcaacaatggaagca
actcggtctctgcgaacgtgttgggacaattacctttgtcatcgtgtatcgcatccagga
gcaacagattggtcgtctgattccacagattctgcgctcttaagagctattattcatttt
accacagctacggtggtatcactcaatgaagacacaggacttttgtctgtggctcatgaa
taa
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