Daphnia magna (water flea): 116933979
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Entry
116933979 CDS
T07514
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116933979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dmk03041
]
116933979
03009 Ribosome biogenesis [BR:
dmk03009
]
116933979
Enzymes [BR:
dmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116933979
Spliceosome [BR:
dmk03041
]
Complex A
U1 snRNP components
U1 related factors
116933979
Complex B
116933979
Ribosome biogenesis [BR:
dmk03009
]
Eukaryotic type
Pre-60S particles
Helicases
116933979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF7136
Cas3-like_C_2
DUF6505
DUF4136
Motif
Other DBs
NCBI-GeneID:
116933979
NCBI-ProteinID:
XP_045027715
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All DBs
Position
LG4:12653992..12657659
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AA seq
522 aa
AA seq
DB search
MSFRDRKSGSDFRGGARGGGSSFGGGSGFGGNRDFKKAQPGDKLRKPRWEMDRLQPFEKN
FYKPHPNLAVKSIHEVEQYRASKDITIRGRDVPFPITSFDEANFPEYVMTELRRQGFKEP
TSIQAQGWPIALSGSNMVGIAQTGSGKTLAYTLPAIVHINHQAYLEPGDGPIALILAPTR
ELAQQISSTAKDFGSSSRIRNTCVFGGAPKGPQLRDIERGVEIMIATPGRLIDFLEAGKT
NLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVRQLAEEFLTDY
IQINVGSLTLSANHNILQIIDVCQEHEKETKLMTLLQEIGAEDENKTIIFAETKRKVDSI
TRAMRRDGWPAMCIHGDKAQPERDWVLNEFRSGKAPILVATDVAARGLDVDDVKFVINFD
YPNCSEDYVHRIGRTGRSQRTGTAYTFFTPNNSKQAQDLVNVLTEANQVVNPKLLELASS
NRGGGGRSRWGGGYGGRGGYGGGNRGYGGGQSYNSSRSWVER
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcagagatcgtaaaagcgggtcagatttccgcggaggagctcgtggagggggt
tccagtttcggagggggttctggttttgggggcaatcgtgacttcaagaaagctcaaccc
ggagataagttacgtaagccaagatgggagatggatcgccttcaaccattcgaaaagaat
ttttacaagccacaccctaacttggctgttaagtcgattcacgaggttgaacagtacagg
gctagcaaggatatcacaatccgcggtagagatgttcctttccctatcacttcctttgat
gaagcaaactttccagaatatgtcatgactgagctcagacgtcaaggtttcaaagaacca
acatctattcaagctcaaggctggccaattgctttgagtggatcgaacatggttgggatt
gcccaaactggatctggaaagactttagcttacactctccctgccattgtgcacattaac
catcaagcctatcttgaacctggagatggaccaattgcacttattctagcccctactcgt
gaattggctcaacaaatctcatccactgcaaaggactttggctcatcttcacgtattcgc
aacacttgtgtttttggtggagctccaaagggtccccagttacgcgatatcgaacgtggg
gtggaaatcatgattgcaacccctggtcgccttattgattttcttgaagctggcaagact
aacttgcgtcgttgcacgtatttggttttggacgaagccgatcggatgcttgacatgggt
tttgagccccaaattcgtaaaattattgaacaaattcggcctgatcgccaaacactcatg
tggtctgccacatggccgaaggaggtgcggcagctggctgaagagttccttaccgactac
attcagattaacgttggctctctgaccctctctgctaaccacaatattttgcaaattatt
gacgtctgccaagagcatgaaaaggaaaccaaactgatgactttgctgcaggaaattggt
gccgaagatgagaacaaaaccattatttttgctgaaacaaaacgaaaagttgatagcatc
acaagagccatgcgccgcgatggatggccggcgatgtgcattcatggtgataaggcgcaa
cctgagcgtgattgggtattgaacgaatttcgctcaggcaaagcacccattttagtagct
actgacgtggctgctcgtggactagatgtggacgacgttaaattcgtcatcaatttcgac
tatcccaactgttccgaagattacgtccatcgaattggtcgtactggccgatcgcaacgc
acaggaaccgcttacacgtttttcacgcccaacaactctaagcaggcccaggatttggtg
aacgttctaacagaagcaaaccaagttgtgaatcctaaacttcttgagcttgcatcttca
aaccgtggtggtggaggccgttccagatggggaggcggttatggtggtcgtggaggttat
ggaggaggtaacagaggctatggaggcggacaatcttacaactccagccgctcctgggtt
gaacgctaa
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