Daphnia magna (water flea): 123468132
Help
Entry
123468132 CDS
T07514
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog isoform X1
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk04140
Autophagy - animal
dmk04142
Lysosome biogenesis
dmk04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
123468132
04140 Autophagy - animal
123468132
04148 Efferocytosis
123468132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dmk04131
]
123468132
Membrane trafficking [BR:
dmk04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
123468132
Hops complex
123468132
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
Clathrin
VPS18_solenoid_2nd
zf-C3HC4_2
TPR_Vps41
Beta-prop_EML_2
zf-C3H2C3
zf-RING_2
zf-C3HC4
zf-rbx1
zf-RING-like
zf-RING_5
Beta-prop_HPS5
zf-ANAPC11
Beta-prop_VPS8
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
123468132
NCBI-ProteinID:
XP_045023732
LinkDB
All DBs
Position
Unknown
AA seq
1092 aa
AA seq
DB search
MAFFQWRRFNFFELLKETDNGTLDRSFKDVTINCSSSGRGYLILGDNLGLVHLFDRQYQR
ESFKAYNVNTSHVLQLKQSSFLGTVGEDDPGINPVIKIWNLEKKDIHGCPVCVHLVRALP
GNRPVPVTAFTIDEQMHLMAAGFADGSIVLYRGDLSRERHSKQKFLQAGTSLISGLCLRT
TQKMSHLYVATLSTVVMYTIVSKDKEQFSQLDTVGCSPGCFAFADSKQGQHFMIARNDAV
YCYTVEGRGPCYAFEGEKLDLHWFRGYLIIVSKIAGKGDADSDKTTVTIFDVNNKFIAFT
APIAKAYRVISEWGSLLVLTKDKNIHQLMEKDLHTKLDILFKKNLYDVAIRVAKSQQYDI
EGLMEIFKLYGDHLYAKGNHSGAMEQYLKTIGRLEPSYVIKKFLDAQRIHQLTAYLQELH
KQGLASEDHTTLLLNCYTKLRDTDRLNQFLNTKDQRSEFDVETAIRVCRQAGYFEQALRL
AEDRGKHEWHLKILLEDLSDYRQALEYIQKLPPDLAKVNLQEYGNVLLEELPDETTKLLL
DLCCSKSHNNEVCDPEEFLLLFINRNEKLVEFLENVLQVHPNSNSSLHFALLEQYLLMWT
KNTANPELEKKITLLLQNSSVLGAADRALFLCQTHKFRPGILFIFEKTKLYGELLHFYAN
ENNFESVISTCRRFGQQEPSLWVRSLTLSTSNDKVTTECLAEILASIEKLKLLPALRVIE
MLGRSPNATLGLARDYLIRTLQSDQSNISEDERLIQQYRQETEAVREKIKDIKTSALVFQ
GSKCNVCNQPLELPSVHFLCLHSFHQHCFDSYADNENECPACHTENKRILDIVRAQEQSK
DLHEAFHGQLEKADDPFTVLADYFGRGVFNSLPSWETAISGHQGVRTDLSSVSWGPQNAG
PGFEAKLRKSEGKSCANLTAFVLPGFTNEGRVRLQENASVRPTRIDVTEGRLRNAEVIGA
VERAASNNAATTTSEARHRLQEGTNAKNFLTTPVEIPRQTVVTQSAASVPNYVGAVKAVV
ASGSSDFSTSLRKSSNLSLRKAYGNQANAEPENPFKENTYDESKNPFADEQSSNPFGDDE
DDYNDSLNPFAE
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atggctttcttccagtggagaaggtttaatttttttgagttactgaaggaaacagacaat
ggtactttggacaggtcattcaaggatgtaacaataaactgtagttcaagtggtagagga
tacctaattcttggagataacttgggcctggtccatctctttgacaggcagtatcaacga
gaatcctttaaggcatataatgtgaatactagccatgtgcttcaacttaaacaatcatca
tttcttggcacagttggtgaagatgatccaggaatcaatcctgttatcaaaatttggaat
ctggaaaagaaagacatacatggttgtccagtatgtgttcacctagttcgagctctcccc
ggaaaccggccagttccagttacggcattcaccattgacgaacaaatgcatttgatggca
gctggatttgcggatggttcaatagtcctatatagaggtgatttaagtcgtgaacgtcac
agcaaacagaagtttctacaggctgggaccagtctcatctctggactttgtttgcggact
acccagaaaatgtcacatttatatgttgcaacactatcaacagtcgtgatgtacacaatt
gtttctaaagacaaggagcaattttcacaacttgatacagtgggttgctccccaggatgt
tttgcgtttgctgactcaaaacaagggcagcatttcatgattgctcgaaatgatgctgtt
tattgttatacagtggaaggaagagggccctgttatgcatttgaaggagagaagcttgac
ttacattggtttcgtggttacctaataatcgtatctaaaattgccggaaagggggacgca
gacagcgacaagaccactgtaaccatcttcgacgtcaataacaagtttattgcatttaca
gcacccatcgctaaagcttatcgagttatttcggaatggggatctctgcttgtactaacg
aaggataaaaatattcatcagttaatggaaaaagacttgcatacaaaactagacattctt
ttcaaaaagaacctttatgacgttgcaatcagagtggccaaaagccaacagtatgatatt
gaagggctaatggagattttcaaactgtatggtgatcatctatacgctaagggaaatcat
tctggagctatggaacaatatttgaaaacaatcggtcgtttggaaccgtcgtacgtcatc
aagaaatttctggatgctcagcggatacatcagttgactgcctacttacaagaactacac
aagcaaggcttggctagcgaagatcacaccacgttacttctaaattgctataccaaactg
agagatacagatcgcttaaaccagtttctaaataccaaagatcaacgaagcgaatttgac
gtcgaaactgccattagagtttgtcgacaggcgggttattttgagcaagcattacgtcta
gctgaagaccgaggaaagcacgaatggcaccttaaaatacttttggaagatctttctgac
taccgacaagcactggaatatattcaaaaattacctccagatttagccaaagtaaatctc
caggaatacggcaatgtcctacttgaagaacttcccgacgagactacaaaactgctatta
gatttatgttgcagtaagagccacaataacgaagtgtgtgatccagaagagtttctgttg
cttttcatcaaccgtaacgagaaattggttgagtttcttgaaaacgtgttacaggtccat
cctaattcaaatagttcactgcattttgcactgcttgagcagtaccttttgatgtggact
aaaaatactgcaaacccggagttggaaaagaaaattacgcttcttctgcagaattcttcc
gtcttgggtgccgcagatcgtgctcttttcctttgtcaaacacacaaatttcgtcctgga
attctgttcatctttgaaaagacaaaactttatggggaattactccacttttatgcaaac
gagaataactttgagagtgtaatttccacctgcagaaggtttggtcagcaagaaccatct
ctatgggtgaggtctttgacattatctacatcaaacgacaaggtaactaccgaatgcttg
gcggaaatattagcctccatagagaaactcaaacttctccctgcccttagagtgattgaa
atgctaggtcgttctcctaacgctactttgggtctcgcacgggactacttgattcgcact
cttcagtcggatcagtcgaacatcagtgaagatgagagacttatccagcagtatcgtcaa
gaaactgaagcagtcagggaaaaaattaaggatataaagacgagtgctttagtgtttcaa
ggttctaaatgcaacgtatgtaaccagccactagaactgccgtcagtccatttcctctgt
ctgcattcattccatcaacattgctttgatagctatgctgataacgagaacgaatgccca
gcctgccatacggaaaataaaaggattttggacattgtccgggcacaggagcagagcaaa
gatcttcatgaagccttccatgggcaactggaaaaagctgatgacccttttacggtactt
gccgactattttggccgcggagtcttcaacagcttaccgtcctgggagacggctatttcg
ggccatcaaggtgttcgtaccgatttgtcatccgtttcttggggacctcaaaatgctggt
ccaggttttgaagctaagctgcgtaagagtgaaggcaaaagctgtgcgaatcttacagct
tttgtcttgccaggattcacgaatgaaggtcgtgtgagattgcaagaaaatgcttcggtc
cgacctacacgaatcgatgtgactgaaggccgattgcgcaacgctgaggtgattggagct
gtagaacgagctgcatcgaataacgctgcgactacaacttccgaagcaaggcatcggctt
caagaaggaacaaacgcgaaaaattttctaacaacaccggtcgaaattccccgtcaaacc
gtggtaacgcaatcggctgcgagcgttccaaactacgtaggagcggttaaagcggttgtc
gcttccggttcatctgacttcagtacgtcactaagaaaatcttctaatttatccctacgt
aaagcgtacggcaatcaagcgaatgcagaaccggaaaatcccttcaaggaaaacacttat
gacgaatcaaaaaatccatttgctgatgagcaatcttccaatccctttggtgatgacgag
gacgattataatgacagtctaaatcctttcgctgaataa
DBGET
integrated database retrieval system
