Daphnia magna (water flea): 123469453
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Entry
123469453 CDS
T07514
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-binding protein SMUBP-2-like
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
dmk
Daphnia magna (water flea)
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dmk03009
]
123469453
03012 Translation factors [BR:
dmk03012
]
123469453
Enzymes [BR:
dmk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123469453
5.6.2.5 RNA 5'-3' helicase
123469453
Ribosome biogenesis [BR:
dmk03009
]
Eukaryotic type
Other ribosome biogenesis factors
123469453
Translation factors [BR:
dmk03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
123469453
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
SMUBP-2_HCS1_1B
AAA_30
AAA_19
R3H
zf-AN1
Viral_helicase1
ResIII
AAA_22
DEAD
AAA_16
nSTAND3
Znf_XAF1_N
SLFN-g3_helicase
UvrD-helicase
DUF5894
Flavi_DEAD
nSTAND_NTPase5
PhoH
AAA
AAA_25
ATPase_2
Zot
TTI1
PIN_8
ABC_tran
Motif
Other DBs
NCBI-GeneID:
123469453
NCBI-ProteinID:
XP_045024398
LinkDB
All DBs
Position
LG1:complement(11826311..11834554)
Genome browser
AA seq
1034 aa
AA seq
DB search
MQFKSLEDFVIQQLELLNLERDAEIAESRKLQETFSAKQLQERGVCILNLVVHGMRSGLY
GRTIITFGSKLVGKELPSSNMSSGDIVGIFSNSSASQLEKDQICSGIISCVKSNTIEIAL
DSDCENIDLNDNECYKLLQLANSVTYRRLKMGLNSLKNYQGPAATLMNTLFGEQVFSSAN
ISLPPVLLGYNNDLVWFNKNLDHSQKGAVEFALKQRELAVVHGPPGTGKTTTVVEIILQT
VKAGNRVLACAPSNVAVDNILEKLVSNSSVKAIRLGHPTRMQEAVQNRSLDAVLSNSEAR
SIVNDVRRDLDAQLKQIPKTKKRGPIFNEIKNLRKELRERETKAVKEVLSHANVILTTLT
SATQEGPLKHLLPDHFDYVVIDECSQATESACWLALTRAPRVLLAGDHFQLPPTIISPEA
ARRGLGLTLMERIIQRKEDGKSCVRMLTTQYRMHRDIMQWASDQLYHGKLEAHSSVASHL
LMELPGVEDNEDTGIPLLLLDTAGCDFHESATSEEGSKANSGEAALVFLHVQRLVESGLP
ARDIAIVTPYNLQVELLRQMLSGKYPQLEIRSVDGFQGREKEAIILSLVRSNSTGQVGFV
ADVRRLNVACTRARRHLCLVTDSSTTSRATSGLVEYMEQHGEVRSAHQYLQEMDNVVVPE
IGNRITGEAAKPRKVVVPSTTTIDSNQSKQEKEEIAAKVKSMLTEWAASAECGASCIKEF
PSTLTAYERLIVHQWAEEHGYQHRSVGENHKRRIQIYKSAVVIPQQADEEIQPTQNEQSH
VTSFDAPTSLKNDADEALPKVVEKMELKENDLSSSKKKKNKKQNSSSGLESQKVPTKDKH
LKLVVPTPSAVSESDDNNVKCDDCKKQVPKQNLALHRLRCTGAGPTEQAVRPKQKPVIKP
LPSLISTDGTKDLNRNGKEKDIDDVLSEFRKLDNVCNYATCKTGISLMGQLCLFCQRRFC
LSHHLPEIHGCGDAIRRQARSVTLKQGFVAPGSLPVKPKVIETAKRAHLQRKLEKKLEDM
STQRAGKKEEKKKK
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgcagtttaaaagcctcgaagattttgtaattcagcagcttgaattgcttaatcttgaa
agggatgcagaaatagctgaaagtagaaaattgcaagaaactttttctgccaaacagctc
caagaaagaggagtatgcatcttaaatttagttgttcatggcatgcgatccggtttgtat
ggtagaactatcataacatttggcagcaaattggttggtaaagaattaccatcatctaac
atgagttctggagacattgttggaatattttcgaattcaagtgcttcacaactagaaaag
gatcaaatttgttctgggatcatcagttgtgttaaatcaaacacaattgaaattgctctt
gatagtgactgtgaaaacattgacttaaatgacaatgaatgctacaagctgttgcagttg
gcaaacagtgtgacctatagaaggcttaaaatgggattgaatagcttgaaaaattaccaa
gggcctgctgcaacacttatgaataccctgtttggtgaacaggtgttctcatcagcaaat
atctctttaccaccggtcctcttaggttacaacaatgatcttgtctggttcaataaaaac
ctggaccattcgcaaaaaggggcagttgaattcgcactgaagcaacgcgaacttgcagtt
gtacatggccctccagggacaggaaaaaccacgacggttgttgaaatcattcttcaaaca
gtcaaagcaggaaatcgagttcttgcctgcgctccgtccaatgtggctgtcgacaacatt
ctggagaaacttgtatccaattcgtctgtaaaagccatccgtttgggacacccaaccagg
atgcaggaagccgtccagaatcgttcgttagatgccgttctttctaatagtgaagcccgt
tctatcgtcaacgacgtccgcagagatcttgatgcccaactaaaacaaataccgaaaacc
aaaaagcgaggacctattttcaacgagattaaaaatctgcggaaagaactccgcgaacgt
gagacgaaagcagtcaaggaagtcctctcacatgcaaatgtcattctgacgacgctcact
agtgctacgcaagaaggacctttaaagcatttgttaccggaccattttgattacgttgtg
atcgacgaatgttcacaggccacggaatcagcctgttggttagcattgacccgagcgcca
agagtcttattagctggtgatcactttcaacttcctcctaccattatatctccggaagct
gcacgtagaggccttggacttacgctcatggaacgcatcatacaacgtaaagaggacggc
aagtcctgcgttcgaatgctgaccacccaataccgcatgcaccgtgatatcatgcagtgg
gcatcggaccaactttaccacggcaagctggaggcacattcatcggtagcgagtcaccta
cttatggaactacctggcgtcgaagacaacgaagacacaggaataccacttctactactt
gacaccgcgggttgtgatttccatgaatcagctacatcagaagaaggatccaaagccaac
agtggtgaagcggctctcgttttcttgcatgtccagcgattggttgaatcgggactacca
gctcgagatatcgctatcgttactccttacaacctccaggtggagctcttgagacaaatg
ttaagcggaaagtatccgcaactcgaaatccgcagcgtggatggcttccaaggccgggaa
aaagaggcaattattttgtctttagtgcgatctaactcgaccggtcaagttggttttgtg
gccgatgttcgtcgactgaacgtggcatgtactcgcgcccgtcggcatctgtgtttagtt
acagactcgagcacgacaagtcgtgctactagtggcctcgttgagtacatggagcaacac
ggagaggtccgttctgcccatcaatacttacaggagatggataatgttgttgttcccgaa
atcggcaatcgtataactggggaggcggcaaaaccacgcaaagtcgtcgttccctctacg
accacgatagatagcaaccagtcaaaacaagaaaaagaagagatagccgctaaagtcaag
tctatgttgaccgaatgggcggccagtgccgaatgtggcgcctcatgtatcaaagaattt
ccatcgacgttgacggcctatgaacgactaatagttcaccaatgggccgaagagcatggt
taccagcatagaagtgtcggagagaatcataaacgtcgcatccaaatatataaatctgcc
gtagtgataccacaacaagcagacgaagaaatccagccgacccaaaacgaacaatctcat
gtaacctcttttgacgcgcccacgtcccttaagaatgatgctgacgaagccttgccaaaa
gtggtcgagaagatggaattaaaagagaatgacttgtcatcgtcaaagaagaaaaagaat
aaaaagcaaaattcatcctcaggattagagagccaaaaagtaccaacaaaggataagcat
ttaaaacttgttgttccaaccccgtcagctgtcagcgagtcggacgacaataacgtcaaa
tgcgatgactgcaaaaaacaagttccaaaacagaatctagctcttcatcgattacgatgc
accggggcaggtccgacagagcaagcagtgagaccaaaacagaaaccagtgattaaacct
ttaccatcattgatttccactgatggaaccaaagacttaaatagaaacggaaaagaaaaa
gatattgatgatgtgttatctgaattccgaaaattggacaatgtctgtaattacgctacc
tgtaaaacgggtatctcattgatgggtcaactatgcttgttctgtcaaagacgcttttgt
ctttcgcaccatcttcccgaaatccatggatgtggtgatgctattcgacgccaggcacgt
agcgtcacactcaaacaaggctttgttgcacctgggtcgttacctgttaaaccaaaggtg
atagaaaccgccaagcgcgctcatcttcaacgtaaactggagaaaaaattagaagatatg
tccacccagcgagctggtaagaaagaagaaaagaagaagaaatga
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