KEGG   Daphnia magna (water flea): 123470088
Entry
123470088         CDS       T07514                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
dmk  Daphnia magna (water flea)
Pathway
dmk03020  RNA polymerase
dmk03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:dmk00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    123470088
  09124 Replication and repair
   03420 Nucleotide excision repair
    123470088
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dmk03021]
    123470088
   03019 Messenger RNA biogenesis [BR:dmk03019]
    123470088
   03400 DNA repair and recombination proteins [BR:dmk03400]
    123470088
Transcription machinery [BR:dmk03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     123470088
Messenger RNA biogenesis [BR:dmk03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     123470088
DNA repair and recombination proteins [BR:dmk03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      123470088
SSDB
Motif
Pfam: S1 SHS2_Rpb7-N RNA_pol_Rbc25
Other DBs
NCBI-GeneID: 123470088
NCBI-ProteinID: XP_045025695
LinkDB
Position
LG2:7793018..7794397
AA seq 172 aa
MFYHIALEHEILLHPRYFGPQLMETVKQKLFTEVEGTCTGKYGFVIAVTTIDTIGAGIIQ
PGQGFVVYPVKYKAIVFRPFKGQVLDAVVTQVNKVGLFTEIGPLSCFISRHSIPSDMQFD
PNSTPPCYKTQDEDVVIQQDDEIRIKIVGLRVDATDIFAIGTLMDDYLGLVS
NT seq 519 nt   +upstreamnt  +downstreamnt
atgttctaccatatcgcattagaacacgaaattctgttgcacccaaggtatttcggtcct
cagttgatggaaacagtaaaacaaaaacttttcacagaggtggaaggcacttgtactgga
aagtatgggtttgtcatagcagttacaacaattgacacaattggagctggaatcatacag
cctggacaaggctttgtagtttatcctgttaaatacaaggcaattgtgttccgtccattt
aaaggacaggttttggatgcagtggtaactcaagtgaataaagttgggctttttacagaa
attggacctttgtcctgtttcatttctagacattccattccatcagatatgcaattcgat
cccaactcaacacctccttgctacaaaacccaggatgaagatgttgttattcaacaggat
gatgaaatcaggataaaaattgttggattaagggttgatgctactgatatttttgctatt
ggaacacttatggatgactacttgggtttggtcagttga

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