Daphnia magna (water flea): 123470104
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Entry
123470104 CDS
T07514
Name
(RefSeq) LOW QUALITY PROTEIN: symplekin-like
KO
K06100
symplekin
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123470104
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmk03021
]
123470104
03019 Messenger RNA biogenesis [BR:
dmk03019
]
123470104
Transcription machinery [BR:
dmk03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123470104
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
123470104
U7-dependent histone pre-mRNA processing factors
123470104
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT
Adaptin_N
Cnd1
Motif
Other DBs
NCBI-GeneID:
123470104
NCBI-ProteinID:
XP_045025762
LinkDB
All DBs
Position
LG2:13612159..13616778
Genome browser
AA seq
1109 aa
AA seq
DB search
MDRVKIEKGTSTEERIVELLNSAATDAGDQSRVDHLIKIQELIIHQEPGLLDNFVDEITA
FQHDRSADVRKTVVGFIEEACKVDPELLGKVMHSLQLLLGDTSIAVQKRVIQALTQLYKV
TLLWLAKAPSVTELMENTWNMLNQMKLQIAKMIDHDNDGVRTIAVKFYEMLIVSQTYPEP
DSIRKENEFSLEEIPLTLKVARPRKLEEEAQLMLEDLMKYHGSAHISSANLMACMGSLTH
IAKSRPQFLDRIVTAMEMLHANLPPTLSKSQVNSVRKHLKLQLLAILKHPASHERSSNIK
TLLGDLGATPQEINKALPSAEEIAKHPRRSERADDSKSGPAAKRRKIEADPVLPVRENPK
EKALAITEEFIVQRLTTKGAADLVIEALPNITSSMPPHFPSIYTPISDAGTQSQIRHVAR
LMASQMTNAGIGPGVAEAGYVPKMGNDFEDDDDDMDDSPGAAVITPGFRGGEDPESAKPG
VASIQPAVQIRARQRALKLAEIAKPLTPQMNESMARSALQRVLKAERTAMLGGVAANRQK
ILASLATXFSGDFKDLVLEYIMADPRLRIELAFSWLYEEYSMVMGFCRQSSIVKDEFRHA
AVDSYTSVFCSLVNGLKKQSDLKEREALLSRLFYESPNIPEQGVLILRTMLCDDAKLVDI
SIQILRQLVQRPSKQLIYLNVLLEISSHENENIRSAVLSCLTDLYDRGALRRVIEDYALM
CLKFLLLEEPPALLSGPEKGRSEVVTTWTEEIIKASLYLFLAVLRSNHKLIHELAVVYVQ
ANADIKRKILRMVEGPVEGMGMESPELLKLVETCPKGAETLLIRIIHILTDKYPPSPALV
EHVRNIYQQRVPDVRFLIPVLNGLGXKEVLSVLPKLIKLNPDVXKKVFSRLLGTQGDSTA
TYPSPLSPTELLIALHNIDSTQCDMKTIMKATSICFMERTVYTQEVLAVVMQQLMDQNPL
PTLLMRTVLQSLSLYPRLSGFVMNILQRLIVKQVWKQKKVWEGFIKCCQRTKPQSFAVIL
QLPPQFLQELLNTSPDLKTPLVEHVMTFTENQRMHIPKLTMDVLNGIAQFQAEAEELHNE
DSKDREVGSPEPMESAIHGDVEPPAPGDS
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atggaccgcgtgaaaattgaaaagggaactagtacagaagaaaggattgtagaacttctg
aattctgcagctacagacgctggtgatcaatcgcgtgttgatcatctaattaaaatccag
gagttgatcatccaccaggaaccaggattgttggacaattttgttgatgaaattacagct
ttccagcatgaccgctctgccgatgttagaaaaacagttgttggcttcattgaagaagct
tgtaaagtggatccagagttacttgggaaggtcatgcatagcttgcaacttctgttaggt
gacacatctatagctgtacagaaacgagtaatccaagcattgactcagctgtacaaagtc
acactgctttggcttgcaaaagcaccatcagtaacagagcttatggaaaacacatggaac
atgctgaatcagatgaagttacaaattgccaaaatgattgatcatgacaatgatggagta
agaactatagctgtaaaattctatgagatgctaattgtatctcaaacatatcctgaacca
gacagcatacgtaaggaaaatgaattcagcttagaagaaatacctttaactcttaaagtg
gccagaccaagaaaacttgaagaagaagctcagctaatgcttgaggacttgatgaagtac
catggctcagcacatattagcagtgcaaacttgatggcttgtatgggttctctcactcat
atagcaaagagtcggcctcagttcttggataggatagtaacagctatggaaatgcttcat
gctaatttacctcctacgttatcaaaatcccaagtcaattctgtccgcaaacatttgaaa
ttacaactactggcaattcttaagcatcctgcttctcatgaacgcagcagcaacataaaa
actcttcttggggacttgggtgctacgcctcaagaaatcaataaagcattgcctagcgct
gaagaaatagcgaagcatccaagacgatctgagcgtgctgatgattccaaaagtggtcca
gcagccaaacgaagaaagatagaagctgacccggtactcccagttcgcgagaaccctaaa
gagaaagcccttgctattacggaagagtttatcgtacaacggctcacgacaaaaggagct
gccgatctcgtaatagaggcgctgcctaatatcaccagcagtatgcctccacattttccc
tctatttatacacctatctcggatgctggaacacaaagtcaaattcgacacgtggctcgt
ctcatggcatctcaaatgaccaatgctggaattggacctggagttgcagaagccggttat
gttccaaaaatgggcaatgattttgaagacgatgatgatgacatggatgattcccctggc
gcagctgtaataacgccaggatttcggggtggggaagatcccgagtcagctaaacctgga
gtggcatcaattcaacctgcagtacaaattcgagcaagacaaagagcgttaaaactagca
gaaattgcgaagcccttgacgccacaaatgaacgaatccatggctcgttctgctcttcaa
cgagtcttgaaagccgaacgaactgccatgcttggtggtgtagcggcgaataggcaaaag
attttggcctcactggcaaccnctttttcgggagattttaaagatctcgttttagaatat
attatggcagatccacgcttgcgaattgaactcgctttctcatggctctatgaagaatat
tctatggttatgggtttctgtcgtcaatcgtctattgtaaaagacgagttccgtcacgca
gctgtcgacagttataccagtgtgttttgctctttagtgaacggattaaagaaacaatcg
gatttaaaagagcgagaagcgttactgagccggttattttacgaatcaccaaatattcca
gaacaaggagtcttgatattgcgaacaatgttatgtgatgacgctaagttggtggatatt
tctatccaaattcttcgccagcttgttcagcgtccatcaaagcaattgatctacctgaat
gttttgctcgaaatcagtagccatgaaaatgaaaatattcgttctgccgttctttcctgc
ttgaccgacttatatgaccgtggagccctccgtcgcgtgattgaggattacgctttaatg
tgcctcaagtttttgttgctagaggagcccccagcgctcctatccgggcccgaaaagggc
agaagtgaggtggttacgacatggaccgaagagataatcaaagcctctctctaccttttc
cttgcagttcttcgttctaatcacaagttaatccatgagctggcagttgtttatgtccaa
gcaaatgccgatatcaagagaaaaatcttgcggatggtcgaaggccccgtggaaggcatg
ggaatggaatctccagaattactaaagttggtcgaaacgtgtcctaaaggagctgaaaca
ctgctcatcaggatcatccatattctcactgataaatatccgccaagccctgcattagtc
gagcacgttcgcaatatttatcaacagcgtgttcccgacgtccgatttcttatacctgtt
ctgaacggccttggannaaaagaagtactttccgtgcttccgaagttgatcaaattaaat
ccagacgtcngtaaaaaagtatttagtcgtctattgggcactcagggagactcaacggcc
acctatcctagcccattgtctcccacggagcttttgatcgctttgcataatattgatagc
actcagtgtgacatgaaaacaatcatgaaagcaacgtcaatatgcttcatggaacgaacg
gtctatacgcaggaagttctagctgttgttatgcaacagctaatggatcaaaatccacta
ccaacccttttaatgcgaaccgttttacagtccctttcgctttacccaagattatcagga
tttgtaatgaatattctgcaaagattgatagtgaaacaggtttggaagcaaaagaaggtc
tgggaaggtttcatcaaatgctgccaaaggacgaagccgcaaagtttcgcggttattctt
cagcttcctcctcaatttcttcaggagttactaaacacatcccctgatcttaagactcca
ctcgtggagcacgtcatgaccttcaccgaaaatcagcgaatgcacattcccaagcttacg
atggatgttcttaacgggattgcccagtttcaagcggaagcagaagaactacataacgag
gattcaaaagatagagaagtgggatctcctgaacccatggagtctgcaattcatggcgat
gtcgaaccacccgctcctggagattcctaa
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