Daphnia magna (water flea): 123470653
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Entry
123470653 CDS
T07514
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
dmk
Daphnia magna (water flea)
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dmk03036
]
123470653
Chromosome and associated proteins [BR:
dmk03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
123470653
microRNA pathway
RISC loading complex
123470653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_dimer
Dicer_platform
DEAD
Helicase_C
ResIII
PAZ
Dicer_PBD
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
123470653
NCBI-ProteinID:
XP_045027139
LinkDB
All DBs
Position
LG3:9797441..9811014
Genome browser
AA seq
1623 aa
AA seq
DB search
MASVQDALDAVGAVDNRINAIEAGQTNMTVGSAYGARQEGSGGGNGRTDGSGVKPGVTHR
ERCTPLMSLDLPDNNEMFLQSFRNVTPDPVAELTFGGLGFLSAIDLTEPNLASSSFDLVM
AEKSAPLLSIGQRDVRVRYENPGMETKASTGFVDADFTPRDYQVELFEAALGENIIAYLP
TGSRKTYIAALLIKEKVHEVTKPLDLGGKRTVFLVPIILLAIQQAAYLRRHTYLRVKEFY
GSMGVDSWRKERWKTEFKENHVLVMTAQIFVNVLNHDFFSAYQLNLLVFDKCHAAVKDAP
MKQVLSKLQSYESLRRPKILGLTAALFRMRCTPHKVPEVIQKLSESMGCIVKIPSSVETV
YRYSTKPCEIVLQYDDENNKQNPDSLTLSVIILDMVFKLMQEFKNSYGELIAKVESDVAK
HPDKIDLLLDALKDINYLLRALGPYGAYHCAHVYIRILQQAKSRVKVPQFLADLNKVSAL
CREIKEICTPYFAKFSPKDRLLLFVHPKVIRLLEIIRNFSPEKNLDELNLKMCAIIFVER
RCTANVLYHFLKDVAKHDETLEFMKPLFTMGQALDRNASLKETKILNIKQNEIMTSFREG
RCNLIVATSVLEEGVDIPACNLIVXFDHIKTYCEYVQAKGRARSRKAFYCLMVSQSETES
YLKNLAQFRIIEQQLLAIGNFEDDRDSIIDDLFCEIIPPYAPYGEDGPRITLLSSISLVN
RYCGQLSSDPNVLLAPKLTIKKADKSVADPAQLKNIKDVLKNLPNDNRGMTNGFSIGDLY
QCRLILPLNSPLREEIIADVMPTKRLAKRAVALKACIMLHKLKELDDVHLFPIPRLIPEE
EEEDLPIEDDASVPQHHGNVTICKRRFPACFSNCRPIPRQPNFVYLIDFMLMKPCLDVNK
LFIPFVGETKLAILTSQVIPAICPLPLIARAGEFQVNLCGVDSIILDDSQLEKLEKFHQF
IFQDVIFLWKRQLDFDLQASDLQYLIVPLQSATEKLDFVLVEKMINAPTVEWEKRPPFTG
NKFSFEPKEYVDAVIVPSYEPLGTLNPFYVDGVSDLTPLSAFPERENETYASYFSKKYNQ
ILAYENQQLVQVSREITRKNFLVPRLASTKKEIPMHHVPELCNIHPLPGSVWKQVVWIPS
VLHRLNGILVAEELRILIFKEANVTHRERCTPLMSLDLPDNNEMFLQSFRNVTPDPVAEL
TFGGLGFLSAIDLTEPNLASSSFDLVMAEKSAPLLSIGQRDVRVRYGNQSAIITVIICPE
ITGVLLSWLDCIALHILHKDYPLPIQQIRFLTSIKTLQTHLPMLQALNPKNVLFSSKTLC
SLIAKDFKKFHSNLKVSFGKVSVISLTTDIWSSRHRSFLGVTAHWLDEVTLQCHSAAISL
KRFTGSHTFDKIANLIHSIILDYGLTGKVRHIVTDNGSNFVKAMRIYFASPSMASANENN
IHETVEIVGSVTEEISEYIISQLAGEDTDVCDSVAVNANIQEIDSYELLSSSFCNDDEDR
NIWLPAHIRCAAHTLNLLATTDMEAILGAYLPSPCRTRWNSLFDSLAVLGIPSVSEEDLE
YLFEYVAIMQPISVYLDLLQGEENCILGHVLPTITKIRVKLEGLVLENGNSIRERLLEKL
DER
NT seq
4872 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtgttcaggacgctttggacgcggtgggggccgtagataatcgtatcaacgct
attgaggccggccagaccaatatgaccgtcggcagcgcttacggcgcgcgtcaggaagga
agtggaggtggtaacggacgcacggacggcagcggagtcaaaccgggggtgacccatcgt
gaacgctgcaccccgcttatgtcattggatttaccagacaacaatgagatgtttctgcag
tcattccggaatgttacgcccgaccccgttgcggaattgacctttggtggcctgggtttc
ctctcggccattgatctaacggaacccaacctcgcttcgtcgtcttttgacctcgttatg
gcagaaaagtcagcgcctctcctctccatcggccaaagggacgtccgcgtcagatacgaa
aatccaggaatggaaactaaagccagtactggttttgtggatgctgatttcaccccaaga
gactaccaggtggaactgtttgaagcagcattaggggaaaatataatcgcttacctacct
accggttccaggaaaacatatatagcagcccttttgattaaggagaaagtacatgaagtc
acaaaaccattggatttgggcgggaaaagaaccgtttttcttgtacctataattttattg
gctattcagcaggcagcctacttgcgacgtcacacttatttgagagtgaaggaattctat
ggaagtatgggtgtcgattcttggagaaaagaaaggtggaaaacagaattcaaagaaaat
cacgtcctagtcatgacggctcaaatttttgtgaatgttttgaaccatgatttcttttct
gcataccaacttaacttattggtattcgacaagtgccatgctgctgtgaaagatgcgccc
atgaaacaagtcctttcgaaactgcaaagctatgaaagtttgcgccggcccaaaattctt
ggtttgacggcagcgctttttaggatgcgatgcacacctcataaggtgcccgaagtcatt
caaaagctctctgaatcaatggggtgcatcgtcaaaattccatccagtgtagaaacggtc
tatcggtattccacgaagccttgcgaaatcgtccttcaatacgatgacgaaaataacaaa
cagaatccagattcgctgacattgagcgttataatccttgatatggtgtttaaactaatg
caagaatttaaaaactcgtatggtgaattgattgccaaagttgaatctgatgttgcaaaa
cacccagacaagatcgatttattgttggatgcacttaaagacataaattatctccttaga
gctctaggaccatatggtgcctatcattgcgcacatgtgtatattcgcatcctacagcaa
gccaagagtcgtgtcaaagttcctcagtttttggcagatttgaacaaagtttctgcgctc
tgcagggaaattaaggaaatctgtactccttatttcgccaagttctcgccaaaggaccgc
ctattactgtttgtacatcccaaagtgatccgtcttttggaaattattcgaaattttagt
cccgaaaagaatctcgacgaactaaatcttaagatgtgtgccatcatttttgtcgaacga
agatgcacggccaatgtactttaccacttcttgaaggatgttgccaaacacgacgaaacc
ttggaatttatgaagccattattcacaatgggccaggcattagatcgaaacgcttcactg
aaagaaactaaaattctcaacataaaacaaaacgagattatgaccagctttcgcgaaggt
cgttgtaatctgatagtggcaacctctgtgctggaagaaggagttgacattcctgcctgt
aatctaattgtataattcgaccacatcaaaacctactgcgaatacgttcaggccaaaggc
cgagcaaggagcaggaaagccttttattgtttgatggtgagccaaagtgaaacggaaagc
tacctgaagaatttggcacagttccgtatcattgaacagcagctcttggctatcggaaat
ttcgaagacgatcgggacagtattatagacgacctattttgcgaaatcatcccaccctac
gctccctacggtgaagacggaccccgtattactttactgagtagtatatcgcttgtcaac
aggtactgtggccagctctcgtcagatccaaatgtccttttggcccccaaactaacaatc
aagaaagctgataaaagcgtagccgatcccgctcaactaaaaaatattaaagacgttctt
aaaaatttaccaaatgataatcgtggaatgaccaacgggttttcgattggtgatttatac
cagtgtcgtctaattcttcccctaaactcgcccttgagagaagagataattgcagacgtg
atgccaactaaacgtctggccaaaagagcagttgctttaaaagcatgcatcatgcttcac
aaactgaaagagctggatgacgttcatctctttcctattccacggctgattccagaagaa
gaagaggaagatttgccaatcgaagatgatgccagtgtacctcaacaccatggaaacgtc
acgatttgcaaacgtcgtttccctgcttgtttttcgaattgccgacctattccgagacag
cccaacttcgtttatttgatagactttatgctgatgaagccttgcctggatgtcaacaaa
ctatttataccatttgtcggggaaacaaagttagccattttgacgtcacaagtcatacct
gcgatttgtccgttacctttgattgcgcgagctggggaattccaagtcaatctgtgtgga
gtggattcaatcatccttgacgacagtcagctagaaaaactcgaaaaatttcatcagttt
atcttccaagacgtgattttcttgtggaaacgtcaactagattttgacctacaggcctct
gatttgcagtacctcattgtccctctacaaagtgcaaccgaaaaactggactttgttctc
gtcgaaaagatgatcaatgcaccaaccgtcgagtgggaaaaacggccacctttcacgggc
aacaagttttcattcgaaccgaaagagtatgtcgacgcagttatcgtcccgtcctatgaa
ccgctggggacattaaatcccttctacgtcgatggcgtttcagacttgacaccgctctct
gcgttcccagaaagagagaatgaaacttacgcatcttatttttccaaaaagtacaatcag
atattggcttatgaaaatcagcagctcgtgcaagtcagtcgcgagataacgaggaaaaac
ttccttgtcccgagattggcttcaacgaagaaagaaattccaatgcatcatgtgcctgaa
ctttgcaatattcatccgctgccaggatctgtttggaaacaggtggtatggatcccatcc
gttcttcatcgtcttaatggcattctggtggccgaagaacttcgcatcttgatctttaaa
gaagctaacgtgacccatcgtgaacgctgcaccccgcttatgtcattggatttaccagac
aacaatgagatgtttctgcagtcattccggaatgttacgcccgaccccgttgcggaattg
acctttggtggcctgggtttcctctcggccattgatctaacggaacccaacctcgcttcg
tcgtcttttgacctcgttatggcagaaaagtcagcgcctctcctctccatcggccaaagg
gacgtccgcgtcagatacggtaaccagtcggctatcatcactgtcatcatatgcccagaa
atcaccggcgtcctactcagttggctcgactgtatcgctttgcatattctacacaaggat
tacccgctcccgatccaacaaattcgcttcttgacatcaattaaaactcttcaaacccac
ctgccgatgttgcaggctttaaatccgaaaaatgttttgttctcctcaaaaactctttgc
tctttgattgccaaagatttcaagaaatttcatagtaatcttaaggttagttttggaaaa
gtatccgtaatttccttgactaccgatatttggagttcgaggcacagaagttttctcggt
gttacagcccattggctagatgaagtcacgttgcagtgccactcagcagctatcagttta
aagagatttacaggaagtcatacctttgataaaatagccaatcttattcatagtataatt
cttgattacggacttacgggaaaagtgcggcatattgtgacagacaatgggtctaatttc
gtcaaagctatgcggatctattttgcatctccctccatggcctctgctaatgaaaacaat
attcatgaaactgtagaaatagttggctcagttacagaggaaatttcggaatatattata
tcccaattagctggagaagatactgatgtctgcgatagtgtggcagtgaatgcaaacatt
caggaaattgattcttacgaactcctaagttcttcattctgtaatgatgatgaagataga
aacatatggctaccggcccatattcgctgcgcagctcatactttaaacttattggcaaca
acagacatggaagctattttaggtgcttatctgccatctccttgccgaacaagatggaat
tctctatttgattctttggctgtgcttggcatcccatctgttagcgaagaagatctcgaa
tacttatttgaatatgttgcaataatgcagcctatttcagtttacttggatcttcttcag
ggtgaagagaactgtattttgggccatgttctgccgacaataacaaaaataagagttaag
cttgaaggtttagtgctcgagaatggcaactctatccgtgaaaggttacttgagaaactt
gacgagaggtaa
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