Daphnia magna (water flea): 123470655
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Entry
123470655 CDS
T07514
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
dmk
Daphnia magna (water flea)
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dmk03036
]
123470655
Chromosome and associated proteins [BR:
dmk03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
123470655
microRNA pathway
RISC loading complex
123470655
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Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_dimer
Dicer_platform
DEAD
Helicase_C
ResIII
PAZ
Dicer_PBD
Motif
Other DBs
NCBI-GeneID:
123470655
NCBI-ProteinID:
XP_045027141
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Position
LG3:9821004..9827158
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AA seq
981 aa
AA seq
DB search
MATLSVKGYLRNLTRENPGMETKASTGFVDADFTPRDYQVELFEAALGENIIAYLPTGSR
KTYIAALLIKEKVHEVTKPLDLGGKRTVFLVPIILLAIQQAAYLRRHTYLRVKEFYGSMG
VDSWRKERWKTEFKENHVLVMTAQIFVNVLNHDFFSAYQLNLLVFDKCHAAVKDAPMKQV
LSKLQSYESLRRPKILGLTAALFRMRCTPHKVPEVIQKLSESMGCIVKIPSSVETVYRYS
TKPCEIVLQYDDENNKQNPDSLTLSVIILDMVFKLMQEFKNSYGELIAKVESDVAKHPDK
IDLLLDALKDINYLLRALGPYGAYHCAHVYIRILQQAKSRVKVPQFLADLNKVSALCREI
KEICTPYFAKFSPKDRLLLFVHPKVIRLLEIIRNFSPEKNLDELNLKMCAIIFVERRCTA
NVLYHFLKDVAKHDETLEFMKPLFTMGQALDRNASLKETKILNIKQNEIMTSFREGLCNL
IVATSVLEEGVDIPACNLIVKFDHIKTYCEYVQAKGRARSRKAFYCLMVSQSETESYLKN
LAQFRSIEQQLLAIGNFEDDRDSIIDNLFCEIIPPYAPYGEDGPRITLLSSISLVNRYCG
QLSSDPNVLLAPKLTIKKADKSVADPAQLKNIKDVLKNLPNDNRGMTNGFSIGDLYQCRL
ILPLNSPLREEIIADVMPTKRLAKRAVALKACIMLHKLKELDDVHLFPIPRLIPEEEEEE
LPIEDDASVPQHHGNVTICKRRFPACFSNCRPIPRQPNFVYLIDFMLMKPCLDVNKLFIP
FVGETKLAILTSQVIPAICPLPLITXAGEFKVNLCGVDSIILDDSQLEKLEKFHQFIFQD
VIFLWKRQLDFDLQASDLQYLIVPLQSATEKLDFVLVEKMINAPTVEWEKRPPFTGNKFS
FEPKEYVDAVIVPSYKPLGTLNPFYVDGVSDLTPLSAFPERENETYASYFSKKYNQILTN
ENQQLVQVSREITRKNFLVPR
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggcaactctatccgtgaaaggttacttgagaaacttgacgagagaaaatccaggaatg
gaaactaaagccagtactggttttgtggatgctgatttcaccccaagagactaccaggtg
gaactgtttgaagcagcattaggggaaaatataatcgcttacctacctaccggttccagg
aaaacatatatagcagcccttttgattaaggagaaagtacatgaagtcacaaaaccattg
gatttgggcgggaaaagaaccgtctttcttgtacctataattttattggctattcagcag
gcagcctacttgcgacgtcacacttatttgagagtgaaggaattctatggaagtatgggt
gtcgattcttggagaaaagaaaggtggaaaacagaattcaaagaaaatcacgtcctagtc
atgacggctcaaatttttgtgaatgttttgaaccatgatttcttttctgcataccaactt
aacttattggtattcgacaagtgccatgctgctgtgaaagatgcgcccatgaaacaagtc
ctttcgaaactgcaaagctatgaaagtttgcgccggcccaaaattcttggtttgacggca
gcgctttttaggatgcgatgcacacctcataaggtgcccgaagtcattcaaaagctctct
gaatcaatggggtgcatcgtcaaaattccatccagtgtagaaacggtctatcggtattcc
acgaagccttgcgaaatcgtccttcaatacgatgacgaaaataacaaacagaatccagat
tcgctgacattgagcgttataatccttgatatggtgtttaaactaatgcaagaatttaaa
aactcgtatggtgaattgattgccaaagttgaatctgatgttgcaaaacacccagacaag
atcgacttattgttggatgcacttaaagacataaattatctccttagagctctaggacca
tatggtgcctatcattgcgcacatgtgtatattcgcatcctacagcaagccaagagtcgt
gtcaaagttcctcagtttttggcagatttgaacaaagtttctgcgctctgcagggaaatt
aaggaaatctgtactccttatttcgccaagttctcgccaaaggaccgcctattactgttt
gtacatcccaaagtgatccgtcttttggaaattattcgaaattttagtcccgaaaagaat
ctcgacgaactaaatcttaagatgtgtgccatcatttttgtcgaacgaagatgcacggcc
aatgtactttaccacttcttgaaggatgttgccaaacacgacgaaaccttggaatttatg
aagccattattcacaatgggccaggcattagatcgaaacgcttcactgaaagaaactaaa
attctcaacataaaacaaaacgagattatgaccagctttcgcgaaggtctttgtaatctg
atagtggcaacctctgtgctggaagaaggagttgacattcctgcctgtaatctaattgta
aaattcgaccacatcaaaacctactgcgaatacgttcaggccaaaggccgagcaaggagc
aggaaagccttttattgtttgatggttagccaaagtgaaacggaaagctacctgaagaat
ttggcacagttccgtagcattgaacagcagctcttggctatcggaaatttcgaagacgat
cgggacagtattatagacaacctattttgcgaaatcatcccaccctacgctccctacggt
gaagacggaccccgtattactttactgagtagtatatcgcttgtcaacaggtactgtggc
cagctctcgtcagatccaaatgtccttttggcccccaaactaacaatcaagaaagctgat
aaaagcgtagccgatcccgctcaactaaaaaatattaaagacgttcttaaaaatttacca
aatgataatcgtggaatgaccaacgggttttcgattggtgatttataccagtgtcgtcta
attcttcccctaaactcgcccttgagagaagagataattgcagacgtgatgccaactaaa
cgtctggccaaaagagcagttgctttaaaagcatgcatcatgcttcacaaactgaaagag
ctggatgacgttcatctctttcctattccacggctgattccagaagaagaagaggaagag
ttgccaatcgaagatgatgccagtgtacctcaacaccatggaaacgtcacgatttgcaaa
cgtcgtttccctgcttgtttttcgaattgccgacctattccgagacagcccaacttcgtt
tatttgatagactttatgctgatgaagccttgcctggatgtcaacaaactatttatacca
ttcgtcggggaaacaaagttagccattttgacgtcacaagtcatacctgcgatttgtccg
ttacctttgattacgtgagctggggaattcaaagtcaatctgtgtggagtggattcaatc
atccttgacgacagtcagctagaaaaactcgaaaaatttcatcagtttatcttccaagac
gtgattttcttgtggaaacgtcaactagattttgacctacaggcctctgatttgcagtac
ctcattgtccctctacaaagtgcaaccgaaaaactggactttgttctcgtcgaaaagatg
atcaatgcaccaaccgtcgagtgggaaaaacggccacctttcacgggcaacaagttttca
ttcgaaccgaaagagtatgtcgacgcagttatcgtcccgtcctataaaccactggggaca
ttaaatcccttctacgtcgatggcgtttcagacttgacaccgctctctgcgttcccagaa
agagagaatgaaacttacgcatcttatttttccaaaaagtacaatcagatattgactaat
gaaaatcagcagctcgtgcaagtcagtcgcgagataacgaggaaaaacttccttgtcccg
aggtga
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