Daphnia magna (water flea): 123470705
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Entry
123470705 CDS
T07514
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dcr-1-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
dmk
Daphnia magna (water flea)
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dmk03036
]
123470705
Chromosome and associated proteins [BR:
dmk03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
123470705
microRNA pathway
RISC loading complex
123470705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Ribonuclease_3
Dicer_dsRBD
Dicer_dimer
Ribonucleas_3_3
PAZ
Helicase_C
Dicer_PBD
Motif
Other DBs
NCBI-GeneID:
123470705
NCBI-ProteinID:
XP_045027194
LinkDB
All DBs
Position
LG3:complement(12070118..12077198)
Genome browser
AA seq
1641 aa
AA seq
DB search
CPVPFCSNFHLEPSLEVCFFVPYVNVPIEYYGEQDYLKEIPDPCLEPVDLLEEYIQIIQN
FGPWGADRAALVYLIHLEKLKTKAVYERHYLLLCLVFTVLLEIRSLCEEEFQGYSEYERI
EKFSHPKVLRLLDILRIHMTVYRPPITSKLPGNNDPTEQTDSTVLVHADDLADQVQKLST
ETLPTVELPENGPSFVRRPTTQSGHVSRRRRPDFPARHHRIREDAYQLCGMIFTERRTTA
KLLYHLLKDASRCDPQLAYLSPLYTVDRVEGMTVKEIESEDRKQEDVMKRFRSRDCNILV
ATSVLEDGIDIPACHLVIRYDLPQTYRAYVHSKARARAKKSHYILMVEKERMDEFLVNLS
HFHATEQILLSKSGYHNSLAEFVNHSEDMLNNIEKPYTPGDASKSYASLQNAISIINRYC
AKLPSDCFTRLIPVWKIRTIMREYVDPSVWDKWSELFQKSDAAGKMRMDVAYVCSLQLPI
NSPLRQTVSGLPMPSKVIAKRSAALEACRLLHQLKELDDNFYPTGKENLRLEEEEDYNAD
LEDEIVPDNLPRPGTTKRRQYYYKQVAEPFIDGIARPNQPCYLYAITMVLSEPIPEEQNT
RGRKIYKPETSLQSLGILNSKPLSQICPFPIFTRSGEVEVQIVKIADEVYVTEEQLKQIT
DFQRYIFRNVLSLEKDPMLLDVFHADCSYLIVPLKRNSLAENAPLNLDFAFIDLISSVRD
AKPQLVADEERTGYVFDPRLFADAVVMKWYRDQEHPQCFYVAEIFYELNPQSKFPDNNYP
TFEKYYRHKYGIQIQNLKQPLLDVDHTSARLNFLTPRYVNRKGVMLPTSSEHTKKTQRES
LQQKQILVPELCSIHPFSASLWRQAVCLPCILYRLNGLLLAEQLRCKVAMEISLGKSQLD
PDFRWPALRFDWKCKSSDPILPPVQKAVSAKNVEEINQPKDETEVNNVPKSPSKPQKREN
KEAKKAXGASLLDIGVWNPDTIDGNNQNDGSYNSDQSMNDSDTDDGSEEEENACKVKEFG
PKFVCRGDTAEAIEEPINLKAKKFKSPEEEELEEGQMDDEEPYEQVEDLLSIKNRWNVDL
TNSDLERRCEDLLKLHKAVIVDESEEPVLAAVEMSVPGLDFPFSFDEQQGLESHPGPSPS
VILQAFTMSSANDGINLERLETIGDSFLKYSITTYLYCKYSSIHEGELSHLRSRQVSNLH
LYQLGKKKLFGGCMVATKFNPHENWLPPGYVIPDALEEALISSGIPLNYWNVVDLQGMEY
MSSEQVKALVQEKSEQIMLRFGGKIPSVEEMVVEGNIYHAQDLPRFVPYNLLTQHSIPDK
SIADCVEALIGAYLRACGPRGALLFMSWLGLKVLPVLDEDAYGYWTPPVSPLVDQPLHVH
VMLDHMLAGFDSFEEKICYKFNDRSYLLQAFSHASYYLNRLTDCYQRLEFLGDAVLDYLI
TRYLYENLPRHPPGALTDLRSALVNNTTFAVLAERFEFHRYFKHLSPTLNQILDKFIKAQ
EENGHSINEEYYMIEAEDVEVPKVLGDVFESVAGAIYLDSHMSLNAVWRVYYNMMKKEID
EFSINVPKSPIRELLELETDRVKFGKAERLPDGRLRVTVDVIGKGTFKGIGRNYRIAKCT
AAKYALRTLEKRKMLTKRGEQ
NT seq
4926 nt
NT seq
+upstream
nt +downstream
nt
tgtcctgttccgttctgctctaatttccatctagaaccttcacttgaagtttgctttttt
gttccttatgtaaatgtgcccatagagtattatggagagcaagactaccttaaagaaatt
cccgatccctgccttgaacctgttgatctacttgaagagtatatccaaatcattcaaaat
tttggtccttggggagcagaccgtgctgctctggtttacctcattcatttagagaaattg
aaaaccaaagcagtttatgaaagacactatcttcttttgtgcttagtcttcacagtttta
cttgaaatacggtcattgtgcgaagaagagtttcagggatattccgaatatgaacgtata
gaaaagtttagccaccctaaagttcttcgtctgttggacatactccgtatacacatgact
gtatatcgaccaccaataacttcaaaattgcctggaaacaatgatccaacagagcaaacc
gattccaccgtattagttcatgctgacgatctcgctgatcaagttcaaaaattgtccacg
gaaacattaccgaccgtagagttacctgagaatggcccgtcctttgtgcgtcggccaaca
actcagtcgggtcacgtaagtcgtcgtaggcgtcctgatttccctgctcgtcaccaccgt
attcgagaagacgcttatcagctatgtggaatgattttcactgaaaggcgcaccacagcc
aaactactctatcatcttttaaaggatgcaagtcgatgcgaccctcagttagcgtatcta
agccctctatataccgttgatcgggtcgaaggcatgaccgtcaaggaaatagaaagtgaa
gatcgaaagcaagaagacgttatgaaacgttttcgcagtcgcgactgtaatattctcgta
gccacgagcgttctagaggatggtattgatattccagcgtgccatctggttatccgatac
gatttgccacaaacttaccgtgcgtatgttcattcaaaggctcgagcgcgcgcaaaaaaa
tcccattatattctgatggtcgagaaggagcgcatggatgaatttctggtgaatctctct
cacttccatgccactgaacaaattctgctaagtaaaagtggctatcacaactctttggcc
gagttcgtcaatcacagtgaagatatgctcaataatattgagaaaccgtacacacctggt
gacgcttcaaaatcatatgcgtctttacaaaacgccatttccatcattaacagatattgc
gcaaagttgcccagtgattgtttcacgcgccttattcctgtttggaaaatacgaacaata
atgcgagaatacgttgacccatctgtttgggacaaatggtccgaactatttcagaaaagc
gatgcagccgggaaaatgcgcatggatgtagcgtatgtgtgctcattacaactaccaata
aattctcctctgcggcaaactgtgtcaggtcttccgatgccatcgaaagttatagccaaa
cgatccgcagcactagaagcgtgtcggttattgcatcagctaaaagagctggacgataac
ttttatcccactgggaaggaaaaccttcgactggaagaggaggaggattacaacgcagat
ttggaagacgaaatcgttcccgacaatctgccacgtccgggcactacgaaacgaaggcag
tactattataagcaagtggccgagccgtttatcgatggtattgcacgtcccaaccaaccc
tgttacttatacgcgatcaccatggtactaagtgagcctatacctgaggagcaaaacacg
cgtgggagaaaaatttacaaacctgagacctccctgcagagtttgggaattttgaatagt
aaaccgctatcgcaaatttgtccgtttcctattttcactcggtcaggcgaggtggaagtg
caaatagtaaaaatcgccgatgaagtctatgtgaccgaggagcaattaaaacaaataaca
gattttcaacgctacatcttccgaaacgtgctttccttggaaaaggatccaatgttgtta
gatgtttttcacgccgactgttcctatctaatcgtgcctttaaagagaaattcgttagcg
gaaaacgcccccttaaatctggattttgcattcatcgatttaatttcatccgttcgagac
gcgaaacctcagctggtagcagacgaagagagaaccggttatgtctttgatccccgcttg
tttgctgatgcggtcgtaatgaaatggtaccgtgatcaagaacatccacaatgtttctac
gttgctgagatattctatgaactcaaccctcagtctaaatttcctgataacaactatcca
acattcgaaaaatattaccgccataaatatgggatccaaatacagaatctgaagcagccg
ctcttggacgtggatcacacttcagctagactaaacttcttaacgccaaggtatgtgaac
cgaaaaggagtaatgcttccaactagttcggagcatacaaaaaagacccaaagagaaagc
ctgcagcaaaagcaaatactggtgcctgaattgtgcagtatccatcctttttcggcctct
ctgtggagacaagcagtttgtttaccgtgcattctttaccgtttgaacggtctcctcctg
gcagaacaactccgctgcaaagtagcgatggaaatctctctgggaaagagtcagcttgac
cctgatttccgctggcccgccttacgattcgattggaaatgcaaatcctcagatcccata
ttaccaccagttcaaaaggcagtcagtgctaaaaatgttgaagaaattaatcagccaaaa
gatgaaaccgaagtcaacaacgtaccgaaatcgccttcaaagccgcagaaaagagaaaat
aaggaagcgaaaaaagcancaggagcttctttattggatatcggagtatggaacccggat
acgattgatggcaacaaccagaatgatggctcatataatagtgatcaaagcatgaacgac
agtgatacggacgatggttcagaggaagaagaaaacgcttgcaaagtgaaagaatttgga
cccaaatttgtctgtagaggagacaccgcagaagcgattgaagaacccattaacctcaaa
gccaaaaaatttaaaagtcccgaggaggaagaattagaagaaggtcagatggatgacgaa
gagccttacgaacaggtcgaagatttgctcagcatcaaaaatcgatggaacgttgatctt
acgaacagtgatttggaacgcagatgtgaagatttgctcaaattacacaaagcagtgatt
gttgatgaatcagaagaacctgtattagcagcggtagaaatgtcagttcctggtttggat
ttccccttcagttttgacgaacaacagggtttagaaagccatccgggaccatcgccgagc
gtgattctgcaggcatttacaatgtctagtgccaatgatggcattaatttagaacgactt
gaaacgattggcgattcgttcttaaagtactctatcacaacttatttgtactgcaaatat
agcagtattcacgagggtgaactcagccatctgcgttcgcgtcaggtttccaatctccat
ctttatcagttgggcaagaaaaaactgtttggtggatgcatggtggcaacgaaattcaat
ccgcacgagaattggttgccacccggatatgtaatcccagatgccttggaagaagcacta
atttcctctggaatcccattgaattattggaatgtcgtggatcttcagggaatggagtat
atgtcaagcgaacaagtgaaagccttggttcaagagaaatcggagcaaatcatgttgcga
tttggtggcaaaattccgtcagtcgaggagatggtagtcgaaggaaatatctaccatgcc
caagacttacctcgtttcgttccttataacctgctaacgcaacatagcatacccgataaa
agtattgccgattgtgtagaggcgctcattggagcctaccttagagcttgtggcccaaga
ggggccctgcttttcatgtcctggcttggattgaaggtgcttcctgtccttgacgaagat
gcttatggctactggactccacctgtctcacctttggttgatcagccattacatgttcat
gtgatgcttgatcacatgctagcgggatttgattcgtttgaagaaaaaatctgctacaag
tttaacgaccgctcctacctgctgcaggccttcagtcacgcctcctactatctcaacaga
ttgaccgattgctatcaaagactcgaattcctcggtgatgccgtcttagattaccttata
acgcggtatttgtacgaaaacctaccgcgtcatccgcctggcgccctaactgatttgcgc
tcggcattggtgaataacacgacgtttgctgttttggcggagcgatttgaattccatcgt
tatttcaagcacctgtctcctactctcaatcaaattctggacaaattcatcaaagctcaa
gaggaaaatgggcattccatcaatgaagagtattatatgattgaagctgaagatgtggaa
gtgcctaaagttcttggcgatgtatttgaatcagtagcaggggcaatatacctcgattcg
cacatgtccctcaatgctgtttggagagtgtactacaatatgatgaaaaaagaaattgac
gagtttagtataaatgttccgaagtcacccatcagagagttgctggaactagaaaccgat
cgagttaaatttgggaaagctgaacgtctccctgacggccgtctaagagttaccgttgac
gtcatcgggaaaggaactttcaaaggaataggtcggaattatcgtatagcaaagtgcacg
gcagccaagtatgctttacgaactttggaaaagcgtaaaatgctgacgaaacgcggcgaa
cagtga
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integrated database retrieval system
