Daphnia magna (water flea): 123470748
Help
Entry
123470748 CDS
T07514
Name
(RefSeq) endoribonuclease Dcr-1-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
dmk
Daphnia magna (water flea)
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dmk03036
]
123470748
Chromosome and associated proteins [BR:
dmk03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
123470748
microRNA pathway
RISC loading complex
123470748
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_platform
Ribonuclease_3
Dicer_dsRBD
Dicer_dimer
Ribonucleas_3_3
PAZ
Helicase_C
DEAD
Dicer_PBD
ResIII
SecA_PP_bind
Motif
Other DBs
NCBI-GeneID:
123470748
NCBI-ProteinID:
XP_045027433
LinkDB
All DBs
Position
LG3:11768688..11776577
Genome browser
AA seq
2052 aa
AA seq
DB search
MMLPLMMDLSTSDNFTPRDSEVELFESAKSKNTIACLKADLGKMFVAVMLIREKAFEVCS
SPLQLGGFSSVYITPTVKLALQRSAYLRHHTPLKVGIFHEKKGVIKWSCQRWKDELGKSQ
VLVMTYQVFLEAIQKDFLEMSKLNLLILDDCHNVMNDEALKKILALYEKSANSLHPRILG
LTASIVNNICKPMELSQLITILENKLQSAISTSNNVLSALQHSTRPKELVCEISSKPEAT
RLELEIMDRVQQLSSYLRDHRYDPIEYYGEQDYLKEIPDPCLEPVDLLEEYIQIIQNFGP
WGADRAALVYLIHLEKLKTKAVYERHYLLLCLVFTVLLEIRSLCEEEFQGYSEYERIEKF
SHPKVLRLLDILRIYRPPITSKLPGNNDPTEQTDSTVLVHADDLADQVQKLSTETLPTVE
LPENGPSFVRRPTTQSGHVSRRRRPDFPARHHRIREDAYQLCGMIFTERRTTAKLLYHLL
KDASRCDPQLAYLSPLYTVDRVEGMTVKEIESEDRKQEDVMKRFRSRDCNILVATSVLED
GIDIPACHLVIRYDLPQTYRAYVHSKARARAKKSHYILMVEKERMDEFLVNLSHFHATEQ
ILLSKSGYHNSLAEFVNHSEDMLNNIEKPYTPGDASKSYASLQNAISIINRYCAKLPSDC
FTRLIPVWKIRTIMREYVDPSVWDKWSELFQKSDAAGKMRMDVAYVCSLQLPINSPLRQT
VSGLPMPSKVIAKRSAALEACRLLHQLKELDDNFYPTGKENLRLEEEEDYNADLEDEIVP
DNLPRPGTTKRRQYYYKQVAEPFIDGIARPNQPCYLYAITMVLSEPIPEEQNTRGRKIYK
PETSLQSLGILNSKPLSQICPFPIFTRSGEVEVQIVKIADEVYVTEEQLKQITDFQRYIF
RNVLSLEKDPMLLDVFHADCSYLIVPLKRNSLAENAPLNLDFAFIDLISSVRDAKPQLVA
DEERTGYVFDPRLFADAVVMKWYRDQEHPQCFYVAEIFYELNPQSKFPDNNYPTFEKYYR
HKYGIQIQNLKQPLLDVDHTSARLNFLTPRYVNRKGVMLPTSSEHTKKTQRESLQQKQIL
VPELCSIHPFSASLWRQAVCLPCILYRLNGLLLAEQLRCKVAMEISLGKSQLDPDFRWPA
LRFDWKCKSSDPILPPVQKAVSAKNVEEINQPKDETEVNNVPKSPSKPQKRENKEAKKST
GASLLDIGVWNPDTIDGNNQNGTGETVDEDYDYSDLQAVALLTNDNGADFDWSKPVVDIS
GLEGSLPKFGVGTQDYVGSWDEPKSKEFSQYRPKSPSELISNFSDGSYNSDQSMNDSDTD
DGSEEEENACKVKEFGPKFVCRGDTAEAIEEPINLKAKKFKSPEEEELEEGQMDDEEPYE
QVEDLLSIKNRWNVDLTNSDLERRCEDLLKLHKAVIVDESVVPVDKEIPIISPFHGRVVD
HPDNLAEVPGNVKSFSDISGTTTGKSNRRLASESPHMLELTRLLLEQCTSEIHDECDPSS
DPSAQLPHIVHPLKKEEPVLAAVEMSVPGLDFPFSFDEQQGLESHPGPSPSVILQAFTMS
SANDGINLERLETIGDSFLKYSITTYLYCKYSSIHEGELSHLRSRQVSNLHLYQLGKKKL
FGGCMVATKFNPHENWLPPGYVIPDALEEALISSGIPLNYWNVVDLQGMEYMSSEQVKAL
VQEKSEQIMLRFGGKIPSVEEMVVEGNIYHAQDLPRFVPYNLLTQHSIPDKSIADCVEAL
IGAYLRACGPRGALLFMSWLGLKVLPVLDEDAYGYWTPPVSPLVDQPLHVHVMLDHMLAG
FDSFEEKICYKFNDRSYLLQAFSHASYYLNRLTDCYQRLEFLGDAVLDYLITRYLYENLP
RHPPGALTDLRSALVNNTTFAVLAERFEFHRYFKHLSPTLNQILDKFVKAQEENGHSINE
EYYMIEAEDVEVPKVLGDVFESVAGAIYLDSHMSLNAVWRVYYNMMKKEIDEFSINVPKS
PIRELLELETDRVKFGKAERLPDGRLRVTVDVIGKGTFKGIGRNYRIAKCTAAKYALRTL
EKRKMLTKRGEQ
NT seq
6159 nt
NT seq
+upstream
nt +downstream
nt
atgatgttaccattaatgatggatttatcaacaagtgacaattttacgccaagagattct
gaggtggaactttttgaatctgccaaatccaaaaacaccattgcatgtttaaaagcagat
ttgggaaaaatgtttgttgctgtaatgttaattcgtgaaaaagcttttgaagtttgcagt
tcaccactacaactaggaggtttctcctcagtatacattacgccaacagttaaattggca
cttcagcgatctgcctacttacgtcatcacactcctttgaaggtgggaatttttcatgag
aaaaaaggagtaataaaatggagctgtcagagatggaaagatgagttgggaaaaagccaa
gtgcttgttatgacttatcaggttttccttgaggctatccagaaagacttccttgaaatg
agcaagcttaatttgttgatattggatgactgccataatgttatgaatgatgaagctttg
aaaaaaatattggctttatatgaaaagtcagccaacagtctacatccaagaatcctggga
ttgactgcatcaatagtgaataacatatgcaagccaatggaactatcccaattgataact
attctggaaaacaaattgcaatcagctatttcaacatcaaacaatgttttatcagcatta
cagcattcaactcgccccaaagaattagtgtgtgaaatatcctcaaagcctgaagccact
cggctcgagctagaaatcatggatcgcgtccagcagttgagtagttatcttcgagatcat
cggtatgatcccatagagtattatggagagcaagactaccttaaagaaattcccgatccc
tgccttgaacctgttgatctacttgaagagtatatccaaatcattcaaaattttggtcct
tggggagcagaccgtgctgctctggtttacctcattcatttagagaaattgaaaaccaaa
gcagtttatgaaagacactatcttcttttgtgcttagtcttcacagttttacttgaaata
cggtcattgtgcgaagaagagtttcagggatattccgaatatgaacgtatagaaaagttt
agccaccctaaagttcttcgtctgttggacatactccgtatatatcgaccaccaataact
tcaaaattgcctggaaacaatgatccaacagagcaaaccgattccaccgtattagttcat
gccgacgatctcgctgatcaagttcaaaaattgtccacggaaacattaccgaccgtagag
ttacctgagaatggcccgtcctttgtgcgtcggccaacaactcagtcgggtcacgtaagt
cgtcgtaggcgtcctgatttccctgctcgtcaccaccgtattcgagaagacgcttatcag
ctatgtggaatgattttcactgaaaggcgcaccacagccaaactactctatcatctttta
aaggatgcaagtcgatgcgaccctcagttagcgtatctaagccctctatataccgttgat
cgggtcgaaggcatgaccgtcaaggaaatagaaagtgaagatcgaaagcaagaagacgtt
atgaaacgttttcgcagtcgcgactgtaatattctcgtagccacgagcgttctagaggat
ggtattgatattccagcgtgccatctggttatccgatacgatttgccacaaacttaccgt
gcgtatgttcattcaaaggctcgagcgcgcgccaaaaaatcccattatattctgatggtc
gagaaggagcgcatggatgaatttctggtgaatctctctcacttccatgccactgaacaa
attctgctaagtaaaagtggctatcacaactctttggccgagttcgtcaatcacagtgaa
gatatgctcaataatattgagaaaccgtacacacctggtgacgcttcaaaatcatatgcg
tctttacaaaacgccatttccatcattaacagatattgcgcaaagttgcccagtgattgt
ttcacgcgccttattcctgtttggaaaatacgaacaataatgcgagaatacgttgaccca
tctgtttgggacaaatggtccgaactatttcagaaaagcgatgcagccgggaaaatgcgc
atggatgtagcgtatgtgtgctcattacaactaccaataaattctcctctgcggcaaact
gtgtcaggtcttccgatgccatcgaaagttatagccaaacgatccgcagcactagaagcg
tgtcggttattgcatcagctaaaagagctggacgataacttttatcccactgggaaggaa
aaccttcgactggaagaggaggaggattacaacgcagatttggaagacgaaatcgttccc
gacaatctgccacgtccgggcactacgaaacgaaggcagtactattataagcaagtggcc
gagccgtttatcgatggtattgcacgtcccaaccaaccctgttacttatacgcgatcacc
atggtattaagtgagcctatacctgaggagcaaaacacgcgtgggagaaaaatttacaaa
cctgagacctccctgcagagtttgggaattttgaatagtaaaccgctatcgcaaatttgt
ccgtttcctattttcactcggtcaggcgaggtggaagtgcaaatagtaaaaatcgccgat
gaagtctatgtgaccgaggagcaattaaaacaaataacagattttcaacgctacatcttc
cgaaacgtgctttccttggaaaaggatccaatgttgttagatgtttttcacgccgactgt
tcctatctaatcgtgcctttaaagagaaattcgttagcggaaaacgcccccttaaatctg
gattttgcattcatcgatttaatttcatccgttcgagacgcgaaacctcagctggtagca
gacgaagagagaaccggttatgtctttgatccccgcttgtttgctgatgcggtcgtaatg
aaatggtaccgtgatcaagaacatccacaatgtttctacgttgctgagatattctatgaa
ctcaaccctcagtctaaatttcctgataacaactatccaacattcgaaaaatattaccgc
cataaatatgggatccaaatacagaatctgaagcagccgctcttggacgtggatcacact
tcagctagactaaacttcttaacgccaaggtatgtgaaccgaaaaggagtaatgcttcca
actagttcggagcatacaaaaaagacccaaagagaaagcctgcaacaaaagcaaatactg
gtgcctgaattgtgcagtatccatcctttttcggcctctctgtggagacaagcagtttgt
ttaccgtgcattctttaccgtttgaacggtctcctcctggcagaacaactccgctgcaaa
gtagcgatggaaatctctctgggaaagagtcagcttgaccctgatttccgctggcccgcc
ttacgatttgattggaaatgcaaatcctcagatcccatattaccaccagttcaaaaggca
gtcagtgctaaaaacgttgaagaaattaatcagccaaaagatgaaaccgaagtcaacaac
gtaccgaaatcgccttcaaagccgcagaaaagagaaaataaggaagcgaaaaaaagcaca
ggagcttctttattggatatcggagtatggaacccggatacgattgatggcaacaaccag
aatggaacgggagaaacggtcgatgaagactatgactatagcgatcttcaagcagtagct
ctgctgaccaatgataatggagcagattttgactggtctaaaccggtggttgatatttct
ggacttgaaggatccctccctaagttcggcgtgggaacacaagattacgttggatcctgg
gatgagccaaaatcaaaggaattctcccagtaccggccgaagtcaccatcggaattgata
agcaatttttcagatggctcatataatagtgatcaaagcatgaatgacagtgatacggac
gatggttcagaggaagaagaaaacgcttgcaaagtgaaagaatttggacccaaatttgtc
tgtagaggagacaccgcagaagcgatcgaagaacccattaacctcaaagccaaaaaattt
aaaagtcccgaggaggaagaattagaagaaggtcagatggatgacgaagagccttacgaa
caggtcgaagatttgctcagcatcaaaaatcgatggaacgttgatcttacgaacagtgat
ttggaacgcagatgtgaagatttgctcaaattacacaaagcagtgattgttgatgaatcc
gtcgtgccagtggacaaagagattcctattatatcgcctttccatggtcgggtagtagac
catccagacaatttggcggaagttcccggaaatgtgaaaagcttttccgatatctctggc
acaacaacaggaaaatcaaatcgtcgactggcatctgagagcccacatatgctagagctt
actcgcctgttgctagaacagtgtaccagtgagattcatgacgaatgcgatccatcttct
gatccatccgctcaactcccccacatagtccatccactaaaaaaagaagaacctgtatta
gcagcggtagaaatgtcagttcctggtttggatttccccttcagttttgacgaacaacag
ggtttagaaagccatccgggaccatcgccgagcgtgattctgcaggcatttacaatgtct
agtgccaatgatggcattaatttagaacgacttgaaacgattggcgattcgttcttaaag
tactctatcacaacttatttgtactgcaaatatagcagtattcacgagggtgaactcagc
catctgcgttcgcgtcaggtttccaatctccatctttatcagttgggcaagaaaaaactg
tttggtggatgcatggtggcaacgaaattcaatccgcacgagaattggttgccacccgga
tatgtaatcccagatgccttggaagaagcactaatttcctctggaatcccattgaattat
tggaatgtcgtggatcttcagggaatggagtatatgtcaagcgaacaagtgaaagccttg
gttcaagagaaatcggagcaaatcatgttgcgatttggtggcaaaattccgtcagtcgag
gagatggtagtcgaaggaaatatctaccatgcccaagacttacctcgtttcgttccttat
aacctgctaacgcaacatagcatacccgataaaagtattgccgattgtgtagaggcgctc
attggagcctaccttagagcttgtggtccaagaggggccctgcttttcatgtcctggctg
ggattgaaggtgcttcctgtccttgacgaagatgcttatggctactggactccacctgtc
tcacctttggttgatcagccattacatgttcatgtgatgcttgatcacatgctagcggga
tttgattcgtttgaagaaaaaatctgctacaagtttaacgaccgctcctacctgctgcag
gccttcagtcacgcctcctactatctcaacagattgaccgattgctatcaaagactcgaa
ttcctcggtgatgccgtcttagattaccttataacgcggtatttgtacgaaaacctacca
cgtcatccgcctggcgccctaactgatttgcgctcggcattggtgaataacacgacgttt
gctgttttggcggagcgatttgaattccatcgttatttcaagcacctgtctcctactctc
aatcaaattctggacaaattcgtcaaagctcaagaggaaaatgggcattccatcaatgaa
gagtattatatgattgaagctgaagatgtggaagtgcctaaagttcttggcgatgtattt
gaatcagtagcaggggcaatatacctcgattcgcacatgtccctcaatgctgtttggaga
gtgtactacaatatgatgaaaaaagaaattgacgagttcagtataaatgttccgaagtca
cccatcagagagttgctggaactagaaaccgatcgagttaaatttgggaaagctgaacgt
ctccctgacggccgtctaagagttaccgttgacgtcatcgggaaaggaactttcaaagga
ataggtcggaattatcgtatagcaaagtgcacggcagccaagtatgctttacgaactttg
gaaaagcgtaaaatgctgacgaaacgcggcgaacagtga
DBGET
integrated database retrieval system
