Daphnia magna (water flea): 123472514
Help
Entry
123472514 CDS
T07514
Name
(RefSeq) cleavage and polyadenylation specificity factor 73-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
dmk
Daphnia magna (water flea)
Pathway
dmk03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dmk00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123472514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmk03021
]
123472514
03019 Messenger RNA biogenesis [BR:
dmk03019
]
123472514
Transcription machinery [BR:
dmk03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123472514
Messenger RNA biogenesis [BR:
dmk03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
123472514
U7-dependent histone pre-mRNA processing factors
123472514
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Gp58
Motif
Other DBs
NCBI-GeneID:
123472514
NCBI-ProteinID:
XP_045030059
LinkDB
All DBs
Position
LG5:11078509..11081635
Genome browser
AA seq
689 aa
AA seq
DB search
MAAKRKNDVPVPVEESDLLVIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDAL
PFVDLIEADQIDLLLISHFHLDHCGALPWFLQKTTFKGRCFMTHATKAIYRWLLSDYIKV
SNISTDQMLYTEADLEASMEKIEVINFHEEKDVGGVRFWAYNAGHVLGAAMFMIEIAGVK
VLYTGDFSRQEDRHLMAAEIPTVRPDILITESTYGTHIHEKREDRESRFTGLIHEIVTRG
GRCLIPVFALGRAQELLLILDEYWSLHPELHEIPIYYASSLAQKCMAVYQTYINAMNEKI
RRQIAINNPFIFKHISSLKGIDQFEDVGPCVIMASPGMMQSGLSRELFEAWCTDPKNGCI
IAGYCVEGTLAKHVLSEPEDITSMAGQKLPMKLSVDYISFSAHTDYQQTSEFIRLLKPPH
VVLVHGEANEMNRLKAALIREYEHDPDTQIRIYNPRNTAAVELHFKGEKTAKVMGSLAFE
KPVEGQIISGVLVKRNFKYQIVAPSDISKYTDMTVSSVTQRMGIHYSGNLQTLQAVLSNV
SSDVEVVHNDKGLKSFRLFSVIDVIVDKSLVTLEWAADSVNDMFADAVLSAILKCESLQG
SKTIVLPTTVDHVRFKECLIEMLQDMFGDEAVPKVFKGDKFIVTVDGKKANIDLTALEVD
CPEDLGFQQVVQTAVLKLYQSLAPKSDKL
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggcggctaaacgtaaaaatgacgttccggtccctgtcgaagaaagcgatttgcttgtg
attaggccattgggtgctggacaagaagtaggccgatcatgtatcatgctcgaattcaaa
ggcaagaagatcatgttggattgtggaatccatccaggtctatcaggcatggatgcactg
ccattcgttgatttgatcgaagcagaccagattgacttgttgcttatttcacatttccac
ttggatcattgtggagcacttccatggttcttacagaaaacaacattcaaaggaaggtgt
ttcatgacacatgccactaaagcaatttaccgttggttgctttctgattacataaaagtc
agcaacatttccacagatcaaatgctctatacagaggctgatttagaggcatcaatggaa
aagattgaagttattaacttccatgaagaaaaagatgttggtggagtgcgtttctgggcc
tataatgcaggccacgttcttggcgctgcaatgtttatgattgaaatcgccggtgtaaaa
gtgctgtacactggcgatttttcccgacaggaggacaggcatttgatggcagccgagatc
cctactgttcgacctgacattctaataacagaatcgacttatggaacccacatccatgag
aaacgggaggatcgagaaagccgcttcacaggccttattcatgaaattgtcaccagaggt
ggcagatgcctcatccccgtcttcgcattgggtcgagcacaagaattgctacttattcta
gacgaatattggagcctgcatcccgaactacatgagattcccatttactatgcctcatcg
cttgcccaaaagtgcatggcagtgtatcagacttacatcaatgccatgaatgaaaaaatt
cggcgacaaatagccatcaacaatcccttcattttcaaacacatctcgagccttaagggt
atcgatcagtttgaagacgttggcccgtgtgtgattatggcgtcgcctggtatgatgcag
agtggtctgtcgcgcgaactctttgaagcctggtgcacagatcccaaaaacggttgcatc
atcgctggttactgcgtcgaaggaacgttggcgaaacatgtactttccgaaccagaagat
atcacaagcatggctgggcaaaaactaccaatgaaactttcggttgattacatctccttt
tctgcccataccgactatcagcaaacaagtgaatttattcgcttgttgaaaccaccgcac
gtagttttggttcatggagaagccaatgaaatgaatcgactgaaagctgcgctcatccga
gagtatgaacatgacccggacacacagattcgcatttacaatccgcgtaacactgcagca
gttgaactacatttcaagggagagaaaacagccaaagtgatgggatctttggcatttgaa
aagccggtggagggacagatcatttccggggtactggtgaagcgcaatttcaaataccaa
attgtcgcaccatctgatatttccaagtacacggacatgaccgtgagcagcgtaactcaa
aggatgggaatccactacagtggaaatttgcagacattgcaggctgttttgtcaaatgtt
tcgtctgacgtcgaagttgtccataatgataagggactcaaatcctttcgtcttttctca
gtcatagatgtcattgttgacaagtctctcgtcacgctagagtgggcagctgattccgtg
aacgacatgtttgccgacgccgttctttcggccattcttaagtgcgaatcacttcaaggt
tcaaagacaattgtacttcccacaacggttgatcacgtccgatttaaggaatgtttgatt
gaaatgctccaagatatgtttggcgatgaagctgttcctaaagtatttaagggggataag
tttatagttactgttgatggtaaaaaggccaacatagatcttactgcattggaggtggat
tgtcctgaagatttgggttttcagcaagtggtacaaactgctgtgctaaaattatatcaa
tctttggctcctaaaagtgataaattgtaa
DBGET
integrated database retrieval system
