Desulfococcus multivorans: Dmul_23420
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Entry
Dmul_23420 CDS
T04568
Symbol
rne
Name
(GenBank) Rne: ribonulcease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dml
Desulfococcus multivorans
Pathway
dml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dmul_23420 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dml03019
]
Dmul_23420 (rne)
03009 Ribosome biogenesis [BR:
dml03009
]
Dmul_23420 (rne)
Enzymes [BR:
dml01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Dmul_23420 (rne)
Messenger RNA biogenesis [BR:
dml03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Dmul_23420 (rne)
Ribosome biogenesis [BR:
dml03009
]
Prokaryotic type
rRNA processing factors
Dmul_23420 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AOY59114
LinkDB
All DBs
Position
2618394..2619854
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AA seq
486 aa
AA seq
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MSSKILINAVDHDECRIAKVTDSKLEEFNIENAAREITHGNIYKGIITRIEPGLQSVFVD
YGAERHGFLQKHEIHSDYFQDNRTGEDSISNLVRRGQELLVQVTKDPILNKGAMLTTFIS
LPGRYIVLMPGSKNKGISRKIEDEEERNRLKELLGMLKIPDGFGLIIRTAGASCTKTRLA
KDLRYLLTLWKNINKKGIGESAPALLYKERHLVLRSIRDSFTHDVKEILVDTESVYQEIK
DFIHIISPKHTRIVKLYKGDKPIFTKYELEDQIASIYENRVDLKSGGSIVIDPTEALVAI
DVNSGKSTQKRSIEQTAFSTNIEAAEEIARQLRLRDLGGLIVIDFIDMRESKHKLEVERN
LKSFIKLDKARIKVGRISRFGLLEMSRQRIRPSIEFGNFQPCKYCGGKGQLPSTEMLGLN
ILRRLQLETLKQGITRVKGVVPLDVADYLLNKKRREILDLEVRRDISILIEGDAAMLPKE
STITSE
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaaaatccttatcaacgccgttgatcacgacgaatgccgcattgccaaggtt
acggacagcaaactggaagagttcaatatagaaaacgcggccagggagatcacccacggc
aatatctacaaaggcatcatcacccggatcgagcccgggcttcaatccgtatttgtagat
tacggcgccgaacggcacggctttcttcaaaagcatgaaattcacagtgactatttccag
gacaatcgtaccggagaggattccatcagcaatctcgttcggcggggacaggaactcctg
gttcaggtgaccaaggaccccatcctcaacaagggggccatgctgacaactttcatctcc
ctgccgggacgttacatcgtcctgatgcccggaagcaagaacaagggcatttcccggaag
atcgaggacgaagaggaacgcaatcgccttaaagaactcctcggcatgctcaaaatcccg
gacggtttcggtctcattattcgaacggccggggcaagctgcaccaaaacccgcctggcg
aaagacctcaggtatctcctcacgctctggaaaaacatcaacaagaaaggtatcggcgaa
agcgcgcctgccctgctttacaaggagcgtcatctcgtcctccgctccatccgggattcc
ttcacccacgatgtgaaggagatcctcgtcgacacggaatcggtctatcaggaaatcaaa
gatttcatccatatcatctcgcccaagcatacccgaatcgtaaagctctacaaaggggac
aaacccatctttaccaaatatgagctggaagaccagattgcgtccatttacgaaaaccgg
gtcgatctgaaatccggcggttccatcgtcatcgatcctaccgaagcgctggtcgccatt
gacgtcaactccgggaaaagcacccagaaacgctccatcgagcagacagcgttctccacc
aacatcgaggccgccgaggagatcgcgcgtcagttgagactcagggatctgggggggctg
atcgtcatcgatttcatcgacatgcgggagtccaagcacaaactggaggtagagcggaac
ctcaaatctttcatcaaactggacaaggcccgcatcaaggtcggacggatttcccgtttc
ggccttctcgagatgtcccggcagcggatccgcccctccatcgagttcggcaatttccaa
ccctgtaaatattgcggtggaaaggggcagttgccttcaacggaaatgctggggctcaac
attctgcgaagactgcaactggaaacattgaaacagggaatcacccgcgtcaagggcgtc
gtacctcttgacgtcgccgattatctgctgaataagaagagaagggagattctcgacctg
gaggttcgccgcgacatcagcattctcatagagggggatgcggccatgcttcccaaagag
agcacgattaccagcgagtga
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