Desulfonema magnum: dnm_010650
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Entry
dnm_010650 CDS
T07102
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
dmm
Desulfonema magnum
Pathway
dmm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dmm00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
dnm_010650 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmm03021
]
dnm_010650 (rpoD)
Transcription machinery [BR:
dmm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
dnm_010650 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
TMPIT
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
QTA85061
UniProt:
A0A975GKS7
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All DBs
Position
805331..807097
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AA seq
588 aa
AA seq
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MTEKSAAKIKTVKKLDRDALKKLISKGKELGYLSYDEINSALPDEMLSPDQIDETLIMFD
DLNIEIVDEKKQKVADKTKKTEEGVIEDTAAISDFGSVTDPVKMYLREMGLVSLLTREEE
VEIAKRIESGEQEVLKSLLDTTTGVESILNLGGHIEGGALRPKHVLRDIDEGDTYVDEAV
QIESFLNTIHAIENFYEEIKEFRDKIFSSEDLGPDEQRRLRRYIARRNNKIFELLKDWRF
EAGVIDRIEKMIRSQIDWFDFMNKKTLMWADRMSASAAEICSCLETEKQFIQWLEPRCDL
QKEEMISLFIAIKDIQKQINEKEKELKTNCRSLKRIMSGVDEGHLKAKMAKGDLIKANLR
LVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIAD
QARTIRIPVHMIETINKLIRTSRYLVQELGREPTPEEIAQKMEIPLDKVRKVLKIAREPI
SLETPIGEEEDSHLGDFIEDKKFMLPSDAAVSLNLAEQTRKVLATLTPREEKVLRMRFGI
GEKADHTLEEVGQDFAVTRERIRQIEAKALRKLRHPTRSRKLKSFLDY
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaaaatccgctgcaaaaataaaaactgtaaaaaaactcgacagagacgcatta
aaaaaattgatttcaaaaggaaaagagctgggctacctctcttatgacgaaatcaacagc
gcgcttcctgacgaaatgctgtctccggatcagattgacgaaaccctcatcatgtttgat
gacctcaatatcgaaattgtagatgaaaaaaaacaaaaagtagcggataagaccaaaaaa
accgaagagggagtgattgaagatactgcggccatatcagatttcggctctgtgactgat
cctgtcaaaatgtatctgcgtgaaatgggccttgtgagtcttttaacccgggaggaagag
gttgagattgccaaaagaatagaatccggtgaacaggaagtcttaaaatcactgcttgac
accaccacaggcgtggaaagtattctgaatctcggaggccatattgaaggcggcgccctt
cgtcccaaacatgtgctgagggatattgacgagggagacacatatgttgacgaagctgtt
cagattgagagttttttaaatacgatccatgccattgaaaatttttatgaagaaatcaaa
gaatttcgggataaaattttttcctcagaagatctgggcccggatgaacagcgccggctc
agaagatatattgctcgccggaataataagatatttgaattgttaaaagactggcgattt
gaagccggggtgattgacagaattgaaaaaatgatacggtcacaaatagactggtttgat
tttatgaacaagaaaacattaatgtgggcagacagaatgagtgcgtccgctgcggaaatt
tgttcctgtctggaaacagaaaagcagtttattcaatggcttgaacctagatgtgaccta
cagaaagaagagatgatttctctttttattgcaattaaggatatccaaaaacagataaat
gaaaaagaaaaagagctgaaaacaaattgtcgttcactcaagcgcatcatgtcaggcgtt
gatgaaggacatctcaaagctaaaatggcaaaaggtgatctgatcaaggcaaatctgcgt
ctggttgtcagtattgccaaaaaatataccaacagaggccttcagtttctggatctgata
caggaagggaatatcggtctgatgaaggcggtggataagtttgaatatcgccgcgggtat
aaattcagcacatatgccacatggtggatacgacaggccatcacccgggccatcgcggac
caggcaagaactatccggattccggttcatatgattgaaaccatcaacaagcttatccgt
acatccagatatctggttcaggaacttggccgggaacccacgcccgaagaaattgctcag
aaaatggaaattcctcttgacaaagtgcgcaaggtgttaaaaattgcaagagaacctatt
tctttggaaacgcctatcggagaggaagaagacagccatttgggggatttcatagaagat
aaaaaattcatgctcccttcggatgcggctgtgagcctgaatcttgcagaacagacaaga
aaggttcttgcaaccctgaccccccgtgaagaaaaagtattgcgtatgcgtttcggtatc
ggggaaaaagcagaccacactcttgaagaagtgggacaggattttgcagtcacccgtgaa
cgcatcagacagattgaagccaaggcgctgagaaagctgaggcatccgacccgaagcaga
aaattgaaaagttttcttgattattag
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