Desulfonema magnum: dnm_050290
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Entry
dnm_050290 CDS
T07102
Symbol
rho
Name
(GenBank) Transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
dmm
Desulfonema magnum
Pathway
dmm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
dnm_050290 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmm03021
]
dnm_050290 (rho)
03019 Messenger RNA biogenesis [BR:
dmm03019
]
dnm_050290 (rho)
Transcription machinery [BR:
dmm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
dnm_050290 (rho)
Messenger RNA biogenesis [BR:
dmm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
dnm_050290 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
ATPase_2
OB_RNB
NACHT
S1CSD-TOTE-2
AAA_22
AAA
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
QTA88984
UniProt:
A0A975BNJ8
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All DBs
Position
complement(3956186..3957433)
Genome browser
AA seq
415 aa
AA seq
DB search
MNIVELKDKKISELTQIAKEFNIEGAAGMKKQELIFALLQAHIEKNGLIFGEGTLEILPD
GFGFLRAPTSNYLPGPDDIYVSPSQIRRFNLRTGDTVSGQIRQPKESERYFALLKVEAIN
YEDPEVAREKILFDNLTPLYPDRKIALETDPENYSTRIMDLLTPIGFGQRGLIVSPPRSG
KTMLLQFIANSITNNHKDIVLFVLLIDERPEEVTDMERSVQGEVISSTFDEPAERHVQVA
EMVIDKAKRLVEHKKDVVILLDSITRLARAYNSVVPPSGKILSGGVDSNALQRPKRFFGA
ARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELQLDRRLSDKRLFPAIDIKKS
GTRKEELLLTQDILNRTWILRKLLSSLNPVDSLEFLLEKMNGTKDNKEFLNAMNA
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgaacattgtagaacttaaagacaaaaaaatcagcgaactgacccagatagccaaagaa
ttcaacatcgagggggctgccgggatgaaaaagcaggagcttattttcgccctgctccag
gctcatatcgaaaagaatggcttgatattcggggagggcacactggaaatactgccggac
ggattcggatttctgagggccccgacttccaattacctgccaggcccggatgatatttat
gtatcaccttcccagatacgccgttttaacctgagaactggtgacacggtatcaggccag
atccgtcagccaaaagaatcggaacgatactttgcgcttttgaaagtagaggctataaat
tatgaagacccggaagtggcaagggaaaagatactctttgacaacctcactcctctttat
cctgacagaaaaatagcccttgaaaccgacccggaaaactactccacccgaatcatggat
ctgctgactcccattggttttggtcagcggggtctgattgtgtctcctccccggtcagga
aaaacaatgcttttacaatttattgccaacagcatcacaaacaaccacaaggatatagtg
ctgtttgttttgctgattgatgaacgtcctgaagaggtcacagacatggagcggtccgtg
cagggggaagtcatcagctccacttttgatgagcctgcggaaaggcatgtccaggtggct
gagatggtgattgacaaggccaaacgtctggtggaacataagaaagatgtggtgattctt
ttggacagcattacccgtctcgcgcgtgcatataactctgttgtgcctcccagcggaaag
attctttcaggtggtgtggattcaaacgcgcttcagcgtcccaaacgttttttcggggct
gccagaaatatcgaggaagggggaagtcttaccattattgcaaccgcccttattgatacg
ggaagccgcatggacgaggtgattttcgaagaattcaagggaaccggcaatatggaactt
cagctggaccggagactttccgacaaacgtctgtttcctgcaattgatattaagaaatca
ggcacgcggaaagaagaacttctgctgactcaggatatcctgaatcggacctggatttta
agaaaacttctttcctcattgaatcctgttgacagtttggaatttttgcttgaaaaaatg
aacggaaccaaggataataaggaatttctgaatgcaatgaatgcatag
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