Desulfonema magnum: dnm_073820
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Entry
dnm_073820 CDS
T07102
Name
(GenBank) Ribonuclease domain-containing protein
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dmm
Desulfonema magnum
Brite
KEGG Orthology (KO) [BR:
dmm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dmm03016
]
dnm_073820
Enzymes [BR:
dmm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
dnm_073820
Transfer RNA biogenesis [BR:
dmm03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
dnm_073820
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
PseudoU_synth_2
Skp1
Motif
Other DBs
NCBI-ProteinID:
QTA91318
UniProt:
A0A975GSQ6
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All DBs
Position
5885355..5887349
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AA seq
664 aa
AA seq
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MESGNIIEYIDRQKIICAVVLEVKTQKLRLLTETNREVKLSENRLSHKCKDRLNLSSGRD
RLVEALKDTVNRRMALVDQIDVRELWDVLNTEQEWIDLATMTEFCFPDNPSQDHEAAVVR
AFFYDKLYFKFNPDRFFPNSEEQVEQIRTQTRETTRKNRIIEEGGIWLRNVLNDNVSEMS
EDKAEFAEILKSVYLFEKNSKHYDLGKAMLAKAGIKVNEMVFDLFVKLGIWDQDEHIELY
QYEIPIDFADPVIGHTKHLVEKVKHDSTCLISENNRRDLTDLPLITIDGQATLDFDDALS
IEDRGDHYCLGVHIADVGHYVKKGDKIDREAIIRGSSIYLPDQKIPMMPPSLAEDICSLR
AGELRPAVSTLIKLSPQGEIIDYEIVPSRIRVKDQLTYYDVNMIAEEDKNISVLHDIAQK
FRQKRLSDGAVQISLPEINIWLENGELIVNKTDRETPGRLLVAETMIMANWLMACFLSKH
GIPAIYRTQPDPRERLYREDEGSLFQNWMQRKFLSRFVLQPQAEHHAGLGLDAYVTATSP
IRKYFDLITQRQIRSVFGLEEPYTPEEIDRAIQMLEQPMSYVSRVQYRRKRYWLLKYLEG
KIGEKEEAIVLSKRRNDYLVLIPEYMTECSLPLPGGLRLKPEDLIQVKIQHVNARKDTLS
VFMA
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaggaaacattattgaatatattgaccgccagaaaattatatgtgcggttgtt
ctggaagttaaaacccagaaactgagacttcttacggagaccaatcgtgaagtcaagctc
tcggaaaatcggttgtcccacaaatgtaaagaccgtctcaacctctcgtcgggaagagac
aggctggttgaagccttaaaagatacggtaaacaggcgcatggctctggttgatcagatt
gatgtcagggaattgtgggacgttctgaatacagaacaggaatggattgatcttgccaca
atgactgagttctgttttccggataacccgtcccaggatcatgaagcagcagttgtcaga
gcatttttttacgacaaactgtatttcaaatttaatccggatcgttttttcccaaattct
gaagaacaggtcgaacaaattcgtacccagacacgggaaaccacccgcaaaaatcgaatt
attgaagaaggcggtatctggctcagaaacgtcttaaatgacaacgtctctgagatgtct
gaggataaggcagaatttgcagaaatacttaaatctgtctatctgtttgaaaaaaacagc
aaacactatgaccttgggaaggcaatgcttgccaaagccggcatcaaggtaaatgaaatg
gtgtttgacctgtttgtaaagctgggtatatgggatcaggatgaacacatagaactctat
cagtatgaaattccgatagattttgctgatcctgtcatcggacatacaaagcatttggta
gagaaagtaaagcatgacagtacttgtctgattagtgaaaacaatcgcagggacctgaca
gaccttccgctgataaccatagacgggcaggcaacgctggactttgatgatgcgttaagc
attgaggacagaggggatcattattgcctgggcgtccatattgccgatgtgggacattat
gtgaaaaaaggagataagattgaccgggaagccatcatacgaggaagttcaatttatctg
cctgatcagaaaattcccatgatgcccccgtccctggccgaagatatttgcagcctcaga
gccggagaactgcgtcccgctgtcagtacactgataaaattaagtccgcagggtgaaatc
attgattatgaaatcgttcccagtcggatccgcgtgaaagatcagctcacctactatgat
gtgaatatgatcgcggaggaagataaaaacatctctgttcttcacgatattgctcagaaa
tttcgtcagaaaaggctctcggacggtgctgttcagatatctttgccggaaatcaatatc
tggctggaaaacggcgaactcattgtaaacaaaacagacagggaaactcccggcagactg
ttggttgccgaaacaatgatcatggcgaactggctgatggcctgctttttatcaaaacat
ggtattcccgcaatttacagaacccagccggatccgagggaacgtctctacagagaagat
gaaggaagcctttttcagaactggatgcagcgcaaatttttaagccgttttgttttgcag
cctcaggcggaacaccatgcagggcttggcctggacgcttatgttacggccacttctccc
atccgtaaatattttgatcttatcacccagcgccagatacggtctgttttcggtcttgag
gagccttacactcctgaagagattgaccgtgccattcagatgcttgaacagcccatgagt
tatgtgtcaagggttcaatatcgccgaaaaaggtattggttattaaaatatcttgagggg
aaaatcggggaaaaagaagaggccattgtcctcagcaaacgaagaaatgactatcttgtg
ctcatacccgaatatatgacagaatgcagtctgccgctgccaggcggattgagattaaag
ccggaagaccttattcaggttaaaatacagcacgtcaatgccagaaaagatacgctttcc
gtatttatggcatga
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