Desulfonema magnum: dnm_076420
Help
Entry
dnm_076420 CDS
T07102
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dmm
Desulfonema magnum
Pathway
dmm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
dnm_076420 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmm03019
]
dnm_076420 (cshA)
03009 Ribosome biogenesis [BR:
dmm03009
]
dnm_076420 (cshA)
Enzymes [BR:
dmm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
dnm_076420 (cshA)
Messenger RNA biogenesis [BR:
dmm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
dnm_076420 (cshA)
Ribosome biogenesis [BR:
dmm03009
]
Prokaryotic type
rRNA helicases
dnm_076420 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QTA91572
UniProt:
A0A975GS58
LinkDB
All DBs
Position
complement(6137628..6139262)
Genome browser
AA seq
544 aa
AA seq
DB search
MTTTFTQLNLNPQLVQTTDELGYATPTPIQSAIIPTMLTGQDVIGQAQTGTGKTAAFSLP
ILNNLVTKQGHVQSLVLAPTRELAIQVADAMYKYGRYPGARVLAVYGGQPYGRQISRLRK
GVDIVVGTPGRLLDLIHQKALDISKLSSVVLDEADEMLSMGFISDIEAILNETPRDRQTA
LFSATLPQGIRRIAKRYMNDPQSFTIGHKQLTVAAVEQRYYLMNEADKLAALTRLFEIEE
ITSALIFVRTRLGTGELVNELALRGFPAEALNGDLSQDARVQVLNRFRKNQIKVLVATDV
AARGLDIDDISHVFNYDLPQDPELYVHRVGRTGRAGKTGIAISLLAPKERWRLGRIESYT
KQKISKSVLPTAEDIQNCRESRLVEQMMVWLRRGRCQREREIVGELTGGGHDPLEIAAAA
LKMARGEEKQRPVEPISEVQEYRQQKNKTDKRRNRRSRRDRDNNSHEKGMVRLTLSTGKS
DGVCVSHVMGTLSHYADIPGRSIGKISIQKKHTFVDVPEKFVGKVLAKTGTYRIGKQNVA
VKRA
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgacaacaacatttactcagttaaacctgaacccgcagttggttcaaaccacagatgaa
cttggctatgcaacaccgactcccatccaatccgctatcattccgaccatgctgaccggt
caggatgtgattggtcaggcccagacaggaactggcaaaacagcggctttttcattaccc
atcctgaataaccttgtaacaaagcaggggcatgtgcaaagtcttgtgctggcccccacc
cgggaactggccatacaggtggcagacgcgatgtataaatacggccgttatcccggggcc
cgtgtgctggcagtttacgggggccagccttacgggcgtcagatcagccgcctcagaaaa
ggcgtggacatcgttgtcggaacccccggacgtctgctcgacctgattcatcagaaagcc
ctggacatcagcaaactctcttctgttgttcttgatgaggcagatgagatgctcagtatg
ggttttatctctgatatcgaagccattctcaatgaaaccccgcgggatcgccagacagcc
ctcttttcagcgactttgccccagggaatccgccgcatagccaaacgctatatgaacgat
ccccaatcttttactatcggacataaacagcttacggtggctgctgttgaacagcgttac
tatctgatgaatgaagcggacaaattggcggcgctcacccgtctgtttgaaattgaggag
atcaccagcgcacttatttttgtccgtacgcgacttggcaccggcgaactggtaaacgaa
ctggcgctgcgcggctttccggcagaagcgttgaacggagatctgagtcaggatgcccgt
gtacaggtgctgaatcgtttccggaagaatcagatcaaggtgctggtggctactgatgtg
gccgcgcgcgggctggatattgacgatatttcgcatgtgtttaactatgatcttccgcag
gaccctgaattgtatgttcatcgcgtcggacgcactggcagggccgggaaaacaggcatc
gccatttcgctgctggccccgaaggaacgatggcgtctgggcaggattgaatcctataca
aagcaaaagattagcaaatctgttctgcccacggcagaagatattcaaaattgcagggaa
tcccggttagtagaacagatgatggtctggctgcgccgcggccgctgccagcgggaaagg
gagatcgtaggggaactcaccggcggagggcatgacccgttggaaattgccgcggcagct
ttgaaaatggctcggggggaagagaaacagcgtcctgtcgaacccatcagcgaggttcag
gaatatcgccagcagaaaaacaagacagataaacggagaaacagaagaagcaggcgtgac
cgggataacaattctcatgaaaaagggatggtcagacttaccctcagcacgggcaaatca
gacggtgtctgtgtcagtcatgtgatgggcacgttatctcattatgcggatattcccggc
cgttctattggcaagatcagtattcagaaaaaacacacgtttgttgatgtgccggaaaaa
tttgtgggaaaagtgctggcgaaaaccggaacttacagaattggcaagcagaatgttgct
gtaaaacgcgcttag
DBGET
integrated database retrieval system
