Desulfonema magnum: dnm_094500
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Entry
dnm_094500 CDS
T07102
Name
(GenBank) Putative ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dmm
Desulfonema magnum
Pathway
dmm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
dnm_094500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmm03019
]
dnm_094500
03400 DNA repair and recombination proteins [BR:
dmm03400
]
dnm_094500
Enzymes [BR:
dmm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
dnm_094500
Messenger RNA biogenesis [BR:
dmm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
dnm_094500
DNA repair and recombination proteins [BR:
dmm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
dnm_094500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
RecQ_Zn_bind
AAA_30
HEM4
UPRTase
Motif
Other DBs
NCBI-ProteinID:
QTA93349
UniProt:
A0A975BX12
LinkDB
All DBs
Position
complement(7548177..7550279)
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AA seq
700 aa
AA seq
DB search
MKDLSKINMEQDLRKYFGFDAFRPGQKAAIRTLMEDRRVLCIQPTGYGKSLLYQLPSLWT
DGLTLVISPLLALMRDQIRHLNERFGIPAASINSDQTAEENAAAQRSASQGRIRILFVAP
EKLDNLETYEFLLGLNVGLLVVDEAHCISTWGHDFRPSYRQIVNAVRSFEEKTPHLRVLG
LTATANQRTEADIARQLTDPAGNPLKILRTGMDRPNISLWVIPVQGTAQKLEVLEKLVRE
AEGAGILYCATREGTEVISEYLTEKNLDVVSYHAGYDSERKRELQQAFMEGTRKAIAATN
ALGMGIDKPDIRFIVHTDIPGSVTAYYQEVGRAGRDGLPARGILLFDERDRRIQDHFIRS
ALPSLEDFRTVYANIRPDEKNALPGLFAVKVRTGLHPTRVNLILAELTEQGLIKKKLVSR
KQVYCRTEKKTAPDLTRYTNQNSVRKTELESMLNYGRGEAGCLMQSLRVALGDDHAEPCG
RCSQCRPDVFPSDFAASFTGDAARWLAERDVPISATKIPKMSQGFSLLNGDLRAPLFVQF
MRQRAENSKGKSFPQLPPDLEKLLLRKLEFLRKRHEFGAVVLLPSRTWMQREFTGNAASR
MIGIPVYFDLLSWKEMPAHRQGELLNNDQRRENVRDKMHITHQLPNISGHGVLLLDDYIG
SGATLKEAVRVLRRQAGVSGEIVPLTMARVRWRLGARGMI
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctctccaaaatcaatatggaacaagaccttcgaaaatatttcggttttgat
gccttccggcccggccagaaagcggccatccgaaccctgatggaagatcgtcgggtgtta
tgcattcagcccacaggatatggaaaatctttgctgtatcagttgccgtctttgtggacg
gacggactgaccctggtgatttctccgctgctggcgctgatgcgggatcagatccggcat
ttgaacgaacgcttcggcatcccggccgccagcattaattctgatcagaccgctgaggaa
aacgccgcggcccagcgttccgcgtctcagggccgcattcgaatcctctttgtggcccct
gaaaagctggacaatctggaaacctacgaatttctccttgggctgaatgtgggcctcctg
gtggtggatgaggcccattgcatctccacctggggccatgatttccgcccttcctatcgt
cagatcgtgaacgcggtccgcagttttgaggaaaagacccctcatctccgggtcctgggc
ctcacagccacggcaaatcagcgcacagaagcggatattgcccgtcagctgacagatccc
gcaggcaatcctctgaaaatccttcggacaggcatggaccgccccaatatcagcctttgg
gtgataccggtacagggaaccgctcagaaactcgaagtcttggaaaagcttgtccgggag
gcagaaggcgccggtattctttattgcgccaccagagaaggaactgaggtcatcagcgaa
taccttacagagaaaaatctggatgttgtttcctatcatgcgggatatgattcggaacgg
aaacgtgagttacaacaggcattcatggagggaacccgcaaggccattgcggccaccaat
gctctgggaatgggcattgacaagcctgatattcgttttatcgttcatacagacattcca
ggttctgttaccgcgtattatcaggaagtgggcagggctggcagagacggtcttcctgcc
cggggaattctcctgtttgatgaaagggaccggcgcattcaggatcactttatccggtcg
gccctgcccagcctggaggatttccgcaccgtgtatgcgaatatccggcctgatgagaaa
aatgccctcccgggcctctttgccgtgaaagtcagaactggccttcatcccacgcgggtg
aatttgattctggcagaactcacggagcagggactgatcaaaaaaaagctggtcagccgg
aaacaggtctattgccgcacagagaaaaaaactgcacctgatctcacccgctacacaaac
cagaatagcgtgcgcaagacggagctggaatccatgcttaactatggacggggagaagcc
ggttgtctgatgcagtcgctcagagtggccctgggagatgatcacgcggaaccctgcggc
cggtgcagccagtgtcgtccggatgtgtttccctcggatttcgcagcttccttcacagga
gatgcggcccgatggttggctgaacgagatgtgcctatttccgcgacaaaaatcccgaag
atgtcacaaggtttttctttgctgaacggagaccttcgggcaccgctgtttgtccaattc
atgcgccagcgggctgaaaacagcaaaggaaaaagctttcctcagttacctcctgatctt
gaaaaactgctcctcagaaaactggagtttctgaggaaacgtcatgagttcggggccgtg
gttctgcttccctcaagaacctggatgcaacgggaatttaccggtaatgcggcatcccga
atgatcggcattcctgtttattttgacctgctttcctggaaagagatgcccgcgcatcgc
cagggagaattgctcaataacgaccagcgaagggagaacgtcagggacaaaatgcacatc
acgcatcagcttccgaacatctccggacacggggtgctgcttttggatgattatattggt
tccggagcgaccttaaaggaggcggtccgggtgttgcgaaggcaggccggtgtgtccggg
gaaattgttccgctgaccatggcgcgtgtccggtggcggcttggagccagggggatgatt
tga
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