Drosophila miranda: 108156397
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Entry
108156397 CDS
T06132
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
dmn
Drosophila miranda
Pathway
dmn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108156397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmn03019
]
108156397
Messenger RNA biogenesis [BR:
dmn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108156397
mRNA degradation factors
5'-3' decay
Decapping complex
108156397
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hel_4HB_N
Motif
Other DBs
NCBI-GeneID:
108156397
NCBI-ProteinID:
XP_017143321
LinkDB
All DBs
Position
2
Genome browser
AA seq
995 aa
AA seq
DB search
MDNSFFGFDTTIPEDEGGDGRVGEEEYDALNDETFGSAINGDWEEAHETLVRLGGNGDKV
RKRGGFADRSAFGGFSAGGNGVPSHTNVLSSAPSSSGSTPAPFNAPFPGTRNMEDADLEL
NLSSMKLDDVDISSFLDSEVGNLSNRINLDSAVWASPPFPNNQPLFQEGFRSAFRPQTQM
KLQQEANANLALHHMHPQAGPKISTLEDIERNLIIQQAIPKLQQQQQPKDRKAFDEFSLA
NRQHVLPSTIPLQQQQQQQPKPQNKGEHIQNNLHTPAHAITKLIAVPPGFLTAPQISPPR
TNLGFHGPHPLPEMLPNPQSQQQLNGLAGNRVPPGFIYPPGLPGSMPQLQQYPLLQQHGA
CALPPNFPLAGNQRPLPTPHLPTALNNFAMHPSFNAMRAAGLHPAAFMQPAHPLQHPQSR
MPPHPLQAANNLLNQQQNSMFNMFNMRLVQEIQQNHPLLQQNAVVARQLQQSRGGSVPID
QRQKQQLQQQQLNRRPDASGNLPQDEYDEYANLMSTRDKHWLIGIQLSQLNTDTPYIDDY
YYTVYRERKALQNGQVRHSQAHKDNQLNHPLTQPRGHAQLVLVQLGNKNGTRNGHGQNRE
RRNSENTNTCSTGVSTNNAVSGSGGTNNTLPGYIFSPLKFENSLGKLQYGSVTAPRKIID
ADIMGGEASLGDIAGSSATSSMSTMSGVNAKSNAGTPLLPSACCDITPSSMRKSRDILLL
IETLYRYLLKLEDLENTNVMATIVLKKKKEAERIAALEQLEMANKTPEERAAEASNPQSI
NPQLNNKFNYEIETTDALVNKLKSGLAFDKVVAMMNVRKGKILLRRIMPFLTEHSVCWTV
WSGVFCSLQTVVKKDKDDFEGVLYALYPEFKKHISKASFETVVTISAAITRNDNKLTGIF
CSRFGILSLVALILRAQEIYVSKIDPTLSDANRQEWRKFLAQVASCLTRTIQNQTISAAI
ESDAIQPLMDHFENFKDLKLDALLALITEARHQID
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggataactcgtttttcggattcgacacaactataccggaggacgaaggtggcgatggg
cgcgttggagaagaagaatatgatgcgctcaacgatgaaacctttgggtctgcaataaat
ggagattgggaagaagctcatgaaacgctggtgcgccttggcggaaatggcgacaaagtt
cgcaagagaggtggtttcgctgatagaagtgcattcgggggattttcagccggtggcaac
ggcgtgcccagtcacacgaatgtgctttcatcagctccctcgtcgagtggctcaacacct
gcgccattcaacgcaccttttcctggcacacgaaatatggaagacgcagacttggagctg
aatctgtcttccatgaagttagatgatgtcgacatttcctcttttctcgatagcgaagtg
ggcaaccttagcaatcgcattaacttggattctgcagtatgggcgtcgccgccgtttccg
aataaccaaccgttatttcaggaaggctttcgcagtgcgtttaggccgcaaacgcagatg
aaactccagcaagaggccaatgcaaatttagcattacatcatatgcatcctcaagctggt
cctaaaatctcgacccttgaggatattgaacgcaatttaatcattcagcaagcaataccg
aagctgcaacagcaacagcaaccaaaagatcggaaagcgtttgatgaatttagcctggct
aaccggcagcatgtgctaccatcaacaataccgctgcaacagcaacagcagcagcaacct
aaaccacaaaacaaaggtgagcatatacaaaataatttgcacacaccagcacatgctata
acgaaattaattgcagtgccccctggattcttgacagcgccgcaaatctcgccaccaagg
acaaatctgggattccatggcccccatccgttacccgagatgttgccaaatccccaatcg
caacaacaactgaatggtttggcaggaaatcgggtgccgcctgggttcatctacccacca
ggtttgccaggaagtatgccccaattgcaacagtatccactgctccaacaacacggtgcc
tgtgccttgcccccaaactttcctctagccggcaatcagcgtccactgccaaccccacat
ctgcccacagccctaaacaactttgcaatgcatccaagtttcaatgcaatgcgagctgct
ggcttgcatccggcggcctttatgcagcctgcgcatccactccaacacccacagtcacga
atgcccccacatcctttgcaggcagccaacaatctgctcaaccagcagcaaaactctatg
ttcaatatgttcaacatgcgcctcgtgcaggagatccaacaaaaccatccgcttcttcag
caaaatgcggtcgttgcgcgccagctccagcaaagtcgaggcggatctgtccctatcgat
cagcgtcaaaagcaacaactacagcagcaacagctaaatagacgtccagacgcatctggg
aaccttccgcaggatgaatacgacgaatatgcaaatctaatgagcacacgggacaagcac
tggttgatcggtatacagttatcacagctgaatacagacaccccctacattgatgactac
tactacacggtctatagagagcgcaaggccctgcagaatggtcaggtgcgacacagtcag
gcccacaaagacaaccagttgaaccatcctttaacgcaacccagaggccatgcacaactt
gtactcgttcagttgggcaacaaaaacggcacacgcaacggacatggacagaaccgcgag
cggcggaactcggaaaacacgaacacttgcagcacgggtgtcagcacaaataatgcagta
agtggaagtggagggaccaacaacactttaccgggatacattttctcgcctctgaagttc
gagaattcgcttggtaaattgcaatatggcagtgtgacagctccacgtaaaataattgac
gctgatatcatgggcggtgaggctagcctcggggatatagcaggaagctcggccacttca
tcaatgagcacaatgagcggggtaaatgcaaagtctaacgccgggacaccacttctacca
agtgcttgttgtgatatcacacccagtagtatgcgcaaatcgcgtgacattttattgctg
atagaaacgctgtatcgctatctactgaaactagaggacctggaaaatacaaacgttatg
gccacgattgttctgaagaaaaagaaggaggccgaacgaattgcagctctagagcagctt
gagatggcaaacaaaacacctgaggagcgagccgccgaagcatctaatccacaaagtatc
aatccacagctgaataataaattcaactacgaaatagagacgactgatgccctggtaaat
aaactaaagtcaggtttggcttttgacaaggtcgtagctatgatgaatgtgcgcaaaggc
aagatacttttacgtcgcattatgccgtttcttactgagcatagtgtatgctggacagtg
tggagtggagtcttctgctcgctacagactgttgtaaagaaggacaaagacgattttgag
ggcgttctctatgctttgtacccagaattcaaaaagcacatcagcaaagccagctttgaa
acagtcgtcaccatttcagcggcaatcacgcggaacgacaataagctaacgggaattttc
tgcagtcgctttgggatcttatcgcttgttgccttgatacttcgtgcccaagaaatatac
gtgtccaaaattgacccaacgcttagcgacgcaaataggcaggaatggcgcaagtttctt
gcgcaggtagcgtcttgcctcacccgaaccatacagaatcagactatctccgcagccatt
gagtcagatgcgattcaaccgctaatggaccattttgaaaattttaaagaccttaaactc
gatgcccttctagcattgataactgaggccaggcatcaaatcgattaa
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