Drosophila miranda: 108158143
Help
Entry
108158143 CDS
T06132
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dmn
Drosophila miranda
Pathway
dmn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dmn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108158143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmn03019
]
108158143
03041 Spliceosome [BR:
dmn03041
]
108158143
Messenger RNA biogenesis [BR:
dmn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108158143
Spliceosome [BR:
dmn03041
]
Complex B
Other components
Prp19-related factors
108158143
Complex C
108158143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
Mad3_BUB1_I
TPR_12
TPR_15
TPR_8
PPR
RPN7
ARM_TT21
ARM_TT21_C
TPR_10
DHR-2_Lobe_A
GEP5
Motif
Other DBs
NCBI-GeneID:
108158143
NCBI-ProteinID:
XP_017145849
LinkDB
All DBs
Position
3:complement(6212191..6215153)
Genome browser
AA seq
884 aa
AA seq
DB search
MVAKTGKTSNAELNFEEEDVPYEEEILRNAYSVKHWLRYIDHKAKAPNNGVNLVYERALK
ELPGSYKIWHNYLRTRRKQVRGKIPTDPMYEQVNNTFERALVFMHKMPRIWIDYGVFMTT
QCKVTRTRHVFDRALRALPITQHGRIWPLFLKFVQRFDMPETALRVYRRYLKLFPEDAEE
YVEYLQQVEKLDEAAQQLADIVDNEYFVSKHGKSNHQLWNELCDLISKNPHKVHSLNVDA
IIRGGLRRYTDQLGHLWNSLADYYVRSGLFDRARDIYEEAIQTVTTVRDFTQVFDEYAQF
EELSLNKRMEEVAKNEEATEEDDIDVELRLSRFEYLMERRLLLLNSVLLRQNPHNVHEWH
KRVNLYEDKPTEIINTYTEAVQTVQPKLAVGKLHTLWVEFAKFYESNGQVEDARVVFERG
TEVEYVKVEDLAAVWCEWAEMELRQQQFEAALKLMQRATAMPKRKVAYHDDSETVQSRLH
RSLKVWSMYADLEESFGTFKTCKAVYERIIDLKICTPQVIINYGMFLEEHNYFEEAYRAY
EKGIALFKWPNVYDIWNSYLSKFLARYGGTKLERARDLFEQCLDQCPAEHAKFFYLLYAK
LEEEHGLARHAMAVYDRATSAVKEEEMFDMYNIFVKKAAEIYGLPRTREIYEKAIEALPE
QHMRHMCVKFAELETKLGEVDRARAIYAHCSQVCDPRITADFWQTWKEFEVRHGNEDTMR
EMLRIKRSIQATYNTQVNMMAAQFVNTNTNGVAADAGAGSGPDAMRLLEEKARQAAAEAK
QQPAEKAASNIMFVRGETQGGAKGKENTVVNPDEIDIGDSEDDDEDEEEDPQQPSGDQAE
AGQATTKTDDEGLIMKKLRFEQKAIPAKVFGSLKPTNQSDSDEG
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atggtggcaaaaaccggcaaaacctcaaatgcagaactcaattttgaagaggaagatgtt
ccctatgaggaggaaattctgaggaatgcctactccgtgaagcactggcttcgctacata
gatcacaaggccaaggcgcccaataatggtgtgaatctggtgtacgagcgcgccctgaag
gagctgcccggcagctacaagatttggcacaactatctgcgaacgcgaaggaagcaggtc
cggggaaagatacccacagatcccatgtacgagcaggtgaacaacacgttcgagcgggcc
ctcgtcttcatgcacaagatgccgcgcatctggatcgactatggcgtcttcatgaccacc
caatgcaaggtgacccgcacgcggcacgtcttcgaccgggcgctgagggcactgcccatc
acacagcacggcaggatctggccgctgttcctgaagttcgtgcaacgcttcgacatgccc
gagacggcgctgagggtgtacaggcgctatctgaagctgtttccggaggatgccgaggag
tatgtggagtacctgcagcaggtggagaagctggacgaggcggcccagcagctggccgac
atagtggacaacgagtatttcgtttcgaagcacggcaagtccaaccaccagctgtggaac
gagctgtgcgacctcatctcgaagaacccgcacaaggtgcactccctgaatgtggacgca
atcatcagaggcggcctgcggcggtacaccgatcagctcggacacctgtggaactccctg
gccgactactatgtgcgctcggggctgtttgaccgggccagggacatctacgaggaggcc
attcaaacggtgaccacagtgcgggacttcacccaagtttttgacgagtacgcgcagttc
gaggagctgtcgttgaacaagcgcatggaggaggtggccaagaatgaggaggccaccgag
gaggacgacatcgatgtggagctgcgcctgtcgcgcttcgaatacctcatggagaggcgt
ctgctgctgctgaacagtgtcctgctgcgccagaatccgcacaacgttcacgagtggcac
aagcgggtcaacctgtacgaggacaagcccacggagatcatcaacacctacaccgaggcc
gtgcagacagtacagcccaagctggcggtgggaaagctgcacaccctctgggtggagttt
gccaagttctacgagtccaatggccaggtggaggatgcccgcgtggtcttcgagcggggc
accgaggtggagtacgtcaaggtggaggatctggccgccgtgtggtgcgagtgggcggag
atggagctgcgccagcagcagttcgaggcagccctcaagctgatgcaacgtgccacggcc
atgcccaagcggaaggtggcgtatcacgacgactcggagacagtgcagtcacgcctccac
agatccctgaaggtttggtccatgtacgccgatctggaggagtcctttggcaccttcaag
acctgcaaggccgtctacgagcgcatcatcgacctgaagatctgcacgccgcaggtgatc
atcaactacggcatgttcctcgaggagcacaactacttcgaggaggcctatcgggcctac
gagaagggcattgccctgtttaagtggccgaatgtgtacgacatctggaactcgtatctg
agcaagttcctcgcgcgctacgggggcacaaagctggagcgggcccgcgacctcttcgaa
cagtgcctggatcagtgtcccgccgagcatgccaaattcttttacctactctacgcgaag
ctggaggaggagcacggcctggcccggcatgccatggccgtctacgatcgcgccacgtcc
gccgtcaaggaagaggagatgttcgacatgtacaacatatttgtgaagaaggccgccgag
atctacggcctgccacgcaccagggagatctacgagaaggccatcgaggccctgcccgag
cagcatatgcgccacatgtgcgtcaaattcgccgagctggagacgaagctgggcgaggtg
gatcgagccagggccatctacgcccattgctcacaggtgtgcgatccccgcatcacggcc
gacttctggcagacctggaaggagttcgaggtgcgtcatggcaacgaggatacaatgcgt
gaaatgctgcggatcaagcgctccattcaggccacctacaacactcaggtcaacatgatg
gctgcgcagtttgttaacacgaacacgaatggtgtggctgccgatgctggtgctggctcc
ggaccggatgccatgcggctgctcgaggagaaggcccgccaggcggcggccgaggccaag
cagcagcccgccgagaaggctgcctccaatatcatgtttgtgcgtggcgagacccagggc
ggggccaagggcaaggaaaatacagtcgtcaatccggatgagattgatattggcgacagc
gaggacgacgacgaggatgaggaggaggacccgcagcagccgagtggagaccaggccgag
gcaggccaggccacaaccaaaaccgatgacgagggcctcatcatgaagaaactgcgcttc
gaacaaaaggccataccggccaaggtctttggcagcctcaagccgacaaatcaatccgat
tccgatgagggataa
DBGET
integrated database retrieval system
