Drosophila miranda: 108159289
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Entry
108159289 CDS
T06132
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 1 isoform X1
KO
K14401
cleavage and polyadenylation specificity factor subunit 1
Organism
dmn
Drosophila miranda
Pathway
dmn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dmn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108159289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmn03021
]
108159289
03019 Messenger RNA biogenesis [BR:
dmn03019
]
108159289
Transcription machinery [BR:
dmn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108159289
Messenger RNA biogenesis [BR:
dmn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108159289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Beta-prop_WDR35_2nd
Beta-prop_EML_2
Motif
Other DBs
NCBI-GeneID:
108159289
NCBI-ProteinID:
XP_017147942
LinkDB
All DBs
Position
3:10543193..10548654
Genome browser
AA seq
1465 aa
AA seq
DB search
MFNLLLCRRRNRDSMFSMCKQTHPATSVEFAISCRFFNNLEENLVVAGANMLKVYRISPN
VEAGQRQKLNPNEMRIAPKMRLECLATYFLYGNVMSLQCVSLAGAMQDALLVSFKDAKLS
VLQHDPDTYALKTLSLHYFEEEDIRGGWTGRYFVPVVRVDPDARCAVMLVYGKRLVVLPF
RKDNSLDEIELTDVKPFKKAPTAMVSRTPIMASYLITLKELDEKIDNVLDIQFLHGYYEP
TLLILYEPVRTCSGRIKVRSDTCVLVAISLNIQQRVHPIIWTVNSLPFDCFQVYPIQKPI
GGCLVMTVNAVIYLNQSVPPYGVSLNSSADNSTSFPLKPQDGVRISLDCANFAFIDVDKL
VISLRTGELYVLTLCVDSMRTVRNFHFHKAAASVLTSCICVCHSEYIFLGSRLGNSLLLH
FTEEDQSTVITLDVDAEQQAEQQEDQDIEEVYDVDQIELAAPQAKSRRIEDEELEVYGSG
AKASVLQLRKFIFEVCDSLINVAPINYMCAGERVEFEEDGTTLRPHAENLHDLKIELVAA
TGHSKNGALSVFVNCINPQIITSFELDGCLDVWTVFDDATKKTSRHDQHDFMLLSQRNST
LVLQTGQEINEIENTGFTVNQATIFVGNLGQQRFIVQVTTRHVRLLQGTRLIQNVPIDVG
SPVVQVSIADPYVCLRMLNGQVITLALRETRGSPRLAINKHTITSSPAVVAIAAYKDLSG
LFTVKSDDVLNLTGGSGSGFGHSFGGYMKAEPNMKVEDEEDLLYGDAGNAFKINSMAVLA
QQSKQKNSDWWRRLLVQAKPSYWLVVSRKSGTLEIYSMPDMKLVYHINDVGNGAMVLSDA
LEFVSLSSSTQENSKVGIVQSCMPQHANSPLPLELSLVGLGLNGERPVLMVRTRVELLIY
QVFRYPKGNLKIRFRKLEQLNLLDQQPSHIELEENDEEEELESYNMQPKYVQKLRPFSNV
GGLAGIMVCGVNPCFVFLTARGELRIHRLQGNGDVRSFAAFNNVNIPNGFLYFDTTFELK
ISVLPSYLSYDSVWPVRKVPLRCTPRQLVYHRENRVYCLITQTEEPMTKYYRFNGEDKEL
SEESRGERFIYPNGSQFEMVLISPETWEIVPDASIRFEPWEHVTAFKIVKLSYEGTRSGL
KEYLCIGTNFNYSEDITSRGNIHIYDIIEVVPEPGKPMTKFKLKEVFKKEQKGPVSAISD
VLGFLVTGLGQKIYIWQLRDGDLIGVAFIDTNIYVHQIITVKSLIFIADVYKSISLLRFQ
EEHRTLSLASRDFNPLEVYGIEFMVDNSNLGFLVTDAERNLIVYMYQPEARESLGGQKLI
RKADYHLGQVVNTMFRVQCHQRGVHQRQPFLYENKHFVVYGTLDGGLGYCLPLPEKVYRR
FLMLQNVLLSYQDHLCGLNPKEFRTLKSFKKQGLNPSRCIIDGDLIWSYRLLPNSDRNEV
AKKIGTRTEEILSDLLEIERLSGVF
NT seq
4398 nt
NT seq
+upstream
nt +downstream
nt
atgtttaatttattgctgtgcagaagaagaaaccgcgactcgatgttctccatgtgcaag
caaacccaccccgccacgtcggtggagttcgccatctcgtgccggttcttcaacaacctc
gaggagaacctcgttgtggccggcgccaacatgctgaaggtgtaccgcatctcgccaaat
gtggaggcggggcagcgccagaagctcaatcccaacgagatgcgcattgccccgaagatg
cggctcgagtgcctggccacatactttctctacggcaatgtgatgtctctgcagtgcgtc
tccctggcgggcgccatgcaggatgctctcctggttagcttcaaggatgcgaagctgtcg
gtgcttcagcacgacccggacacatacgccctaaagacactatcgctgcactacttcgag
gaggaggacatccggggtggctggacgggtcgctactttgtgccggtggtgcgcgtggac
ccggacgcccgctgtgctgtcatgctggtctacggcaaacgactggtggtgctgcccttc
cgcaaggacaacagtctggacgagatcgagctgacggacgtgaagcccttcaagaaggca
cccacagcaatggtctcgaggacgcccatcatggcctcctacctgataaccctcaaagaa
ctggacgagaagattgacaacgtcctggatatacagttcctgcacggctactacgagcct
acgctcctgattctctacgaaccggtgcgcacctgctcgggccgcatcaaagtacgctcc
gacacctgcgtcttggtggccatctccctgaacattcagcagcgcgtccatccgattata
tggacagtgaatagtctgcccttcgactgctttcaggtttatccgattcagaagcccatt
ggcggctgtctggtgatgactgtgaatgccgtgatctacctcaaccagagtgtaccgccg
tatggcgtcagcctgaacagctcggcggacaacagcaccagcttccccctcaagccccag
gatggtgtgcggatcagcctggattgcgccaatttcgccttcattgatgtggacaagctg
gtgatctcgctgcgcacgggcgagctctatgtgctgactctttgcgtggactccatgcgt
actgtgaggaatttccactttcacaaagcggccgccagtgtcctgaccagctgcatttgc
gtctgccactcggagtacattttcctgggctctcggttgggcaattccctgttgctgcac
ttcaccgaagaggatcagagcacggtcatcacgctggatgtggatgcggaacaacaagca
gagcagcaggaggatcaggacatcgaggaggtttacgatgtggaccaaattgaattggct
gcccctcaagccaagtcccgacggatcgaagacgaggaactggaggtctatggctcgggg
gccaaggcttcggttctccagctgcgcaaattcatcttcgaggtctgcgacagcctcatc
aatgtggcgcccatcaattacatgtgcgccggcgagcgcgtggagttcgaggaggatggg
accacgctgcgaccgcatgcggagaacctgcatgacctgaagatcgagctggtggccgcc
acggggcacagtaaaaacggtgccctctccgtctttgtgaactgcatcaatccgcagatc
atcaccagcttcgagctggacggctgcctggacgtgtggacggtgttcgacgatgccaca
aagaagacttcgcggcacgatcagcacgatttcatgctgctctcgcagaggaactccacc
ctggtcctgcagaccgggcaggagatcaatgagattgagaataccggattcacggtgaat
caggccaccatatttgtgggcaatctcggccagcagcggttcattgttcaggttaccaca
cgccatgtgcgtctgctgcagggcactcgcctcatccagaacgtgcccatcgatgtgggc
tcgccggtggtgcaggtgtccatagccgatccctatgtgtgcctgcgtatgctaaacggc
caggtgatcacactggcactgcgcgagacgcgcggctcgccccgactggctatcaacaag
cacacgatcaccagctcgcccgccgtcgtggccatcgctgcgtacaaggatctgtcggga
ctgttcacggtcaagtcggacgatgtgctcaatctgacggggggctcgggcagcggcttt
ggccacagcttcgggggctacatgaaggcggagcccaacatgaaggtggaggatgaggag
gacctgctgtacggcgatgccgggaatgccttcaagatcaacagcatggcggtcctggcc
cagcaatcgaagcagaagaactcggactggtggcgccgactcctggtgcaggcaaagccc
agctactggctggtggtctcccgcaagagtggaacactcgagatctactcgatgccagat
atgaagctcgtctaccacatcaatgatgtgggcaacggggcaatggtcctctcggatgcc
ctggagttcgtttcgctctcatccagcacgcaggagaactccaaggtgggcattgtccag
tcctgtatgccgcagcacgccaactccccgctgcccctcgaactaagtctcgtggggctc
gggctcaatggagagcggcccgtgctgatggtgcgcacccgcgtggagctgctcatctat
caggtgttcaggtatcccaagggcaacctgaagatccgcttccgcaagctggagcagctg
aatctgctggatcagcagccctcgcacatagagctcgaggagaacgacgaagaggaggag
ctggagtcctacaacatgcaaccgaagtacgtccaaaagctgcggcccttctccaacgtt
ggaggtttggctgggatcatggtctgtggcgtgaacccctgctttgtcttccttaccgcc
cgcggcgaactccgcatccaccgcctgcagggcaacggcgacgtccgcagcttcgctgcc
ttcaacaacgtgaacatacccaatggattcctgtactttgacaccaccttcgagctgaag
atctccgtgctgcccagctacctgagctacgactccgtctggcccgtgcgcaaggtgccg
ctgcggtgcacgccccgtcagctggtgtaccaccgcgagaatcgggtctactgcctgatc
acgcagacggaggagccgatgaccaagtactaccgcttcaacggggaggacaaagagctg
tccgaggagagccgcggcgagcggttcatctatccgaatgggtcgcagttcgagatggtt
ctcatctcgcccgagacctgggagattgtgccggacgcctccattcgcttcgagccgtgg
gagcatgtgacggccttcaagatcgtgaagctgtcgtacgagggcacgcgatcgggtctc
aaggagtacctctgcatcggcaccaacttcaactacagcgaggacatcaccagccgcggc
aacatccacatctacgacatcatcgaggtggttcccgagccgggcaagcccatgaccaag
ttcaagctaaaagaggtcttcaagaaggagcagaagggccccgtctcggccatatcggat
gtgctgggcttcctggtcaccgggctgggccagaagatctacatctggcagctgcgggac
ggcgacctcatcggcgtggcctttatcgacaccaacatctatgtccaccagatcatcacc
gtcaagtccctgatcttcatagcggacgtgtacaagtcgatcagtctgctgcgcttccag
gaggagcaccgcaccctctcgctggcctcgcgcgacttcaatcccctcgaggtgtacggc
atcgagtttatggtggacaacagcaatctgggcttcctggtgacggacgctgagcgcaac
ctgattgtctacatgtatcagccggaggccagggaatctctcggcggccagaagctcatc
cgcaaggcagactaccatctggggcaggtggtgaataccatgttccgggtgcaatgccat
cagcggggcgtgcaccagcgacagcccttcctctacgagaacaaacactttgtcgtctat
ggcaccttggatgggggtctcggctactgtctgccgcttccggagaaggtctatcgccgc
ttccttatgctgcagaacgtcctgctctcgtaccaggaccacttgtgcggcctcaatccc
aaagagttccgcacgctgaagtcgttcaaaaagcagggcctcaacccttcgcgttgcatc
atcgatggcgacctgatctggtcctatcgcctgctccccaactccgatcgcaatgaggtg
gccaagaagattggcacgcggaccgaggagattctgtcagatctgctggagatcgaacgc
ctgtctggtgttttctag
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integrated database retrieval system
