Drosophila miranda: 108159343
Help
Entry
108159343 CDS
T06132
Name
(RefSeq) uncharacterized protein LOC108159343 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
dmn
Drosophila miranda
Pathway
dmn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dmn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108159343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmn03021
]
108159343
03019 Messenger RNA biogenesis [BR:
dmn03019
]
108159343
Transcription machinery [BR:
dmn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108159343
Messenger RNA biogenesis [BR:
dmn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108159343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Pcf11_C
Pcf11_helical
zf_PCFS4
Pfc11_Clp1_ID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
108159343
NCBI-ProteinID:
XP_017148031
LinkDB
All DBs
Position
3:22502241..22513035
Genome browser
AA seq
2011 aa
AA seq
DB search
MDQLFQSYRDDERRIGEEYLSSLQDLNCNSKPLINMLTMLAEENINYAHVIVRVVEYYIS
QVPPEFKLPILYLIDSIIKNVRSSYVQLFAQCIVNIFLNAFESVQHSQSQLLEKVRERMY
ALRQTWNEVFPPSKMYALDVKVKRLDNNWPITAKNPTNKIHVNPAIHVNPDFLKTGLVPG
MPVNSTLPSDMEEILQAKTRELLELKKRKLELELEQTKKHLEEQERQLNQATDAIAVAPN
VAMPAPPASVAALRPPIMEPVVRNSRNAGNPGIPNTPAAQQPFSAKSRVNPVNPALLNSV
RQRDPRLARQMQSQVEAAPSRSSDPRLEGKSSSSSHKSSRSRSKSPVRNSSRSTKSNNGS
SSHPNSSSNRKRSESKSSTSSSGSDARHKSGGGASSSSSTLSPAKRSSKPSAKEHSDRHD
RNGSPSNLKRKSTSPTTSPLKSKRNAAHKSSSSMRGKSSSTRSRSRSPIFMDVDLRSGGG
KSPEQKTAAPESLSQVAASASASSSASALAAAVAAKMTISTNDLEKHTFQILEPGPPAPA
ASSPPIMVASSMDIDLRRPQTPPPPAFAIAKTKPLDQSNSRSTTNTTTTTFTSNNNSISS
TTKIASSASNASSPSSTSTTSSSKLPAKVSFKIQKQFNKLDKSTANLSTALLISPSTSAS
ASALAAASAPLVNQSSPQGNVSEVLQQSINKLLQVQGITGEKRSADSLPLEIDEDEQPPQ
QKRSKSTKLDALFGSEDVDLRREIPAVVKPGSANAVIVVEDDSMDNCDVEKPQSKTNSQL
KRPSLEELRAKLAKSARLHNKLSGKSDKVRDQSVVQRLKQLAELKANDDSQEAHDEKMRT
ILSQAQEMYENHNMNQEQYKDLVQKVVAINENSKMKESRRRPDGAEVERNAARDAVLRKR
IPKLKSNENHSSGSPRSDGSPRYEDQPIQGSTSTEKPTQNKREKSKRENKRRKPSKWGEQ
VDPAAAQRAAWQLANVNNNNNNSNNNNKRCGAGGAGGSLPVVPPGFRGMPWQQPPAIVMP
QTIVPPPPQPPSMMGLPPVPPVTMTKAINSLDNPMADVVRSIAIDGGSKEIRFYNQVAII
FMDGDEPHEIGFQHGQRVILIDHNEPLPLSFNDDYKPFHLDGALHRIRFGFPSRELYIDD
HWYEIYFGGPPVSLPIGNSLHVLKAEGPPPNVDIGRVRRDLVVGKINMIVDAHTIVPLFL
DARQQTFQMGAEQHSIQFVDSFQYALLDGQLQKIEYGGLPKGMKLNGGRSCFIRFGTLPK
GVVAGKTHVADMVYIKTEAPAEPPQPPPMIVQPLPVVEQQPAAAAHVPAVSLPAASNALG
NLNINDLFQKLVSSGIIGGTSIPGISSGESTSTKEAPAAAAPADAQATAAPPVYVSPPTE
PIKRINLQRPETIKTRQSAVVATLYLGMQCSSCGVRFPPEQTIKYSQHLDWHFRQNRRER
DSTRKATSRRWYYDLNDWRQYEEIEDVEEREKNFLDTQGQPGGPDAIDDLSQQRSLDSPV
PTCAAGNDDVDRSCDMCHEKFEQFYNEELEEWHLRSAIRVEDKIYHPLCYEDYKTSLNPP
AEQKDSKDVDMNNTDDNAMDTLLKLEDGGKEDDAAKRAPNLFDDDDDDVIVLPNEEPSVT
EIVDDDEDEYVPANVTRAEMGNETEDKVEPSSGCEHDGEKQKSSQQPQNESANESDVEIQ
EPNIPFTDLDTYVEKEMDDETRLALLNVKIKEEPKDEYDEDEDDGFEDVGTVVPLLPLPE
DEISINSSETQTQTIGSSPSPATIERPASVASLTLPANDDELEAADTVATVANAETELNG
EPQESTHNLSAAGPAPALPLTNLVNRIKINITKNTSSIASNSASNGSSMAATSTPAAATM
GSAADTQVSAISVIGGSGNCSSMETSQQVNAIQTISTIPVLCGGNTFVPKIATSAPANIS
SISVIGSSYGTNSRNSNSIATTTAPTSATVSAVVGAGSSSAVAQKPATPPPAVDADPEPV
VELKPALRNVTLKRTKKVQNGTETSGLCSIM
NT seq
6036 nt
NT seq
+upstream
nt +downstream
nt
atggatcaattatttcagtcataccgcgatgatgagcgacgtattggtgaggagtatctg
tcgagtctacaggacttgaactgcaatagcaaaccgctcatcaacatgctcacaatgctg
gcggaggagaacattaactatgcccacgtcatagtccgcgtggtggagtactacatcagc
caggtgccgcccgagtttaaattgcccatactatatttaattgattcgataattaagaat
gtgagaagcagctacgtgcagttgttcgcacaatgtatagtgaacatattcctcaacgcg
tttgaatcggtgcagcattcccagtcgcagttgctggagaaggtccgcgaacggatgtat
gccctgcgacagacctggaacgaggtgttcccaccttccaaaatgtatgccctagacgta
aaggtgaagcgtcttgataataactggcccattacggccaagaaccccaccaacaaaata
catgttaatcccgccattcatgttaatccggactttctcaaaacgggtttggttcctggg
atgccggttaactccacactgcccagcgacatggaggagatactccaggctaagacccgc
gagcttctggagctcaagaaacgcaaactggagcttgagctagagcaaaccaagaagcat
ttagaggagcaagagcgtcagctgaaccaggcgacggatgctattgctgtcgcacccaat
gtcgctatgccagcgccacccgcttctgttgctgctcttcgtccacctattatggaacca
gtcgttcgaaattctcgaaacgctgggaatcctgggataccaaacacgccagctgcccaa
cagcccttttccgcgaagtcaagggttaatccagtcaatccggctctactgaactctgtg
cgtcagcgggatccacgtttggcgcggcaaatgcaatctcaagtggaggcggctccctcg
cgatcctctgatccccgtctggagggaaaatcctcctcatcttcgcataaatctagtcga
tcgcgcagcaagtcaccggtacgcaacagcagtcgctccaccaagagcaacaatggcagc
agctcccatccaaacagctcatcgaatcgcaagcgcagcgaatccaagagctcaacatct
tcatcgggatctgatgcacgacacaaaagtggaggtggcgctagcagtagctcctcgaca
ctatcgcctgccaaacgctcatctaaaccatcggcaaaggagcattccgaccgacatgac
cgaaatggatcaccgtcaaatttgaagcgtaaaagcacctctccaaccacctcgccatta
aaatctaagcgtaatgctgcacacaaatcgtcatcgtccatgcgcggaaagtcgtcctcg
acccgatcacgcagtcgctcgcccatcttcatggacgttgacctgcgcagcggtggtgga
aagtctcccgaacagaaaacagcagctccagaatccctatctcaagtggcagcatcagca
tcagcatcatcctcagcctcagcattagcagcggcagtagcagcaaaaatgacaatcagc
acgaatgatttagagaaacatacatttcaaatacttgaaccaggccctccagctcctgca
gcttcaagtccaccgattatggtggcatccagtatggacattgacttgaggcggccccag
acgccgcctccgccagcattcgccatagccaaaaccaaaccactcgaccagagcaacagc
agaagcaccaccaacacgaccacaacaacattcacatccaacaacaacagcatcagcagc
acaacaaaaattgctagtagcgcctccaacgcatcatcgccatcatctactagtactacg
tcttcttcaaaattgcccgcaaaagtgtcgttcaaaatacaaaaacagtttaataaatta
gataaatctacagcgaatctatcaacagcattactgataagcccatcaacatcagcatca
gcatctgcattagccgccgcatccgcaccactagtcaatcagagctcgccgcagggtaat
gtatcggaggtactgcagcaatccatcaacaaactgctgcaggtacaaggcatcactggg
gagaagcgctccgcagattcgctacccttagagatcgacgaggatgagcagccaccgcag
cagaaacgcagcaaatcaactaaactggacgctctcttcggcagcgaggatgttgatctg
cgtcgcgagattcccgctgtggtaaagcctggaagtgccaatgcagtcatcgtggtggaa
gacgactcaatggacaactgtgatgtggaaaagccacaatccaaaacaaattcgcagctc
aagaggccatcactcgaggagctgcgcgccaagctggccaagtctgcgcgtctccacaac
aagctatccggtaagtccgacaaagtcagagatcagtctgtggtgcagcgtctcaagcag
ctggccgagctgaaggccaacgatgattcgcaggaggcgcacgacgagaagatgcgcacg
atcctcagccaggctcaggagatgtacgagaaccacaatatgaaccaagagcagtacaag
gacctggtccagaaggttgtggccattaacgagaacagcaagatgaaggagtcccgtcgc
cgacctgatggtgcggaagtggagcgtaatgcagcccgagatgctgttctgcgcaagcgg
atacccaagctcaagagcaacgagaatcattcctctggctcgccacgcagcgacggctcc
cctagatatgaggatcagccaatacagggatcgacgtccaccgaaaagccgacgcaaaat
aaacgggagaagtccaagagagagaacaagagacgaaagcccagcaaatggggcgaacag
gtggatcctgcggctgctcaaagggccgcctggcagttggccaatgtcaataacaacaac
aacaacagcaataacaataataagagatgtggagctggaggagcggggggttcgcttcct
gtcgtaccacccgggttccggggaatgccctggcaacagccgcctgcgattgtgatgcca
caaacgatcgtcccgccaccaccacagccgccctcgatgatgggtctgccaccagttccg
cccgtaacaatgaccaaggccatcaattcgctggacaaccccatggcggatgtggtgcgc
agcatcgccatcgatggcggatccaaagagattcgcttctacaaccaggtggccatcata
tttatggatggcgacgagccgcacgagattggcttccagcatggccagcgcgtgatcctg
atcgatcacaatgagcctctgccgctgagcttcaacgatgactacaagccgttccatcta
gatggggccctacatcgcatccgctttgggtttccctcccgcgagctctatatcgacgat
cattggtatgagatctactttggtggaccgccagtctccctgcccattggcaacagcctg
cacgtactcaaggcggagggtcctccgcccaatgtggacattggccgagtgcgtcgtgac
ctggtggttggcaaaataaacatgattgtggatgcccacacgattgttccactcttcctg
gatgccagacagcagaccttccagatgggagccgagcagcattcgatacagtttgtggac
agcttccaatatgctctcctcgatggccagctccagaagatcgaatatggcggcctgccc
aagggcatgaagctgaatggcggacgcagctgctttatccgattcggaaccctgccaaag
ggcgttgtggccggcaagacgcacgtggctgatatggtctacattaagacagaagctccg
gcagagccaccccagcccccaccgatgattgtccagcccctgcccgtagtggagcagcag
ccagcggcagcagcacatgtaccagccgtatccctgccagctgcatccaatgctcttggc
aatctgaatatcaatgatttgttccaaaagctcgtctcgtctggaataattggtggaacc
tctattccggggatatcgtctggcgaatcaacctcaaccaaagaagcgcccgcagctgcc
gctccagctgatgcccaagccacagccgccccaccggtgtacgtttcgccgccaacggag
cccatcaaacgcatcaacctacagaggccagagactattaagacccggcagtcggcggtg
gtggccacgctctacctgggcatgcagtgcagcagctgtggtgtgcgtttcccgccagag
cagaccattaagtacagtcagcatctagactggcacttccgtcagaaccgacgcgagcgt
gactcgacccgcaaggccacctccaggcgctggtactatgacctgaatgactggcggcag
tacgaagagatcgaggatgtggaagagcgggagaagaatttcctggatacgcagggccag
ccaggcggccccgatgcaatcgatgatctctcccagcaacgatcgctggactcgcctgtg
cccacctgcgcagccggtaacgatgatgtggaccgttcctgcgacatgtgccacgagaag
ttcgagcagttctacaacgaggagctggaggaatggcacttgcgcagtgccattcgcgtc
gaggataagatctaccatccattgtgctatgaggactacaagacttcgttgaacccgccc
gcagagcaaaaagactccaaagatgtggacatgaacaacaccgatgacaacgcaatggac
acgttacttaagctggaggatgggggtaaggaagatgacgccgctaagcgtgcgccgaac
ctgttcgatgatgatgacgatgatgtaattgtgttgcccaacgaagagcccagcgtcact
gaaattgtcgacgacgatgaagatgagtatgtccccgccaatgtgacgcgcgccgaaatg
ggcaacgaaacggaggacaaggtggaacccagctctggctgcgagcatgatggggagaag
cagaaaagcagccagcagccacagaatgaatcagccaacgagtctgatgtggagatccaa
gagccaaacattcccttcaccgatctggacacgtatgtggagaaggagatggatgatgag
acgcggttggccctgctaaatgtaaagatcaaagaggagcccaaggacgagtacgatgag
gacgaagacgatggcttcgaagatgtgggcacggtagtgccactgctgccgttgcccgag
gatgagatatccatcaacagcagcgaaacacaaacccaaacgattggatcctcgccctcg
ccggctactatagagcgaccagcttcggtggcctcgctcactcttccagccaacgacgat
gagctggaggccgcggacacggtggcgacggtggccaacgcggaaacagaactgaatgga
gagccgcaggagtcgacgcataacctgagcgcagcaggaccggcaccggcgttacctttg
actaacttagttaatagaatcaaaataaatattactaagaatacaagtagtatagcaagt
aatagtgcctccaacggctcatcaatggccgccacatcgacgccggcagcagcaacgatg
ggatcggcagcggatacgcaagtctcggccatcagtgtcataggcggatccggaaactgc
agttctatggagacctcgcagcaggtgaacgcaattcaaaccatttccaccattccagtt
ctgtgcggcggtaacacattcgtccccaagattgcaaccagtgctccagccaatatcagt
tccatctcggtcattggcagcagctacggcaccaacagccgcaacagcaactcaatcgcg
accacaacggcaccaacttcggcgacagtctcggcggttgttggagcgggatcatcttct
gccgttgcccagaaaccagccacacccccgcctgctgtcgatgccgatccggagccggtg
gttgaactgaagccagcgttgcggaatgtgacgctcaaacgaacgaaaaaggtccagaat
ggcaccgaaacatcgggtctctgctcgatcatgtaa
DBGET
integrated database retrieval system
