Drosophila miranda: 108160289
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Entry
108160289 CDS
T06132
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
dmn
Drosophila miranda
Pathway
dmn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dmn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108160289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dmn03041
]
108160289
03009 Ribosome biogenesis [BR:
dmn03009
]
108160289
Enzymes [BR:
dmn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108160289
Spliceosome [BR:
dmn03041
]
Complex A
U2 snRNP components
U2 related factors
108160289
Complex B
108160289
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
108160289
Ribosome biogenesis [BR:
dmn03009
]
Eukaryotic type
90S particles
Helicases
108160289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
SRP54
ResIII
ABC_tran
AAA_30
T2SSE
AAA_25
AAA_7
ATPase
TsaE
PhoH
AAA_24
Motif
Other DBs
NCBI-GeneID:
108160289
NCBI-ProteinID:
XP_017149669
LinkDB
All DBs
Position
3:5906824..5910285
Genome browser
AA seq
739 aa
AA seq
DB search
MSKRRIEVGETYVSKSKNRVADASSTSASASASASTVAAAAGTVAQILGGFVPSKQPPTT
NALTGKTYSQRFQNLYKKRIALPVFEYQADFMRLLSQHQCIVLVGETGSGKTTQIPQWCV
DFAVSKGRKGVSCTQPRRVAAMSVAQRVSEEMDVNLGEEVGYSIRFEDCSSAKTLLKYMT
DGMLLREAMSDPMLEQYQVILLDEAHERTLATDILMGVLKEVIRQRNDLKLIVMSATLDA
GKFQQYFDNAPLMNVPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEIEGDILMFLT
GQEEIEEACKRIKREIDNLGSEIGELKCIPLYSTLPPNLQQRIFEAAPPPNANGAIGRKV
VVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR
PGKCFRLYTEKAFKNEMQDNTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETLM
RALELLNYLAALDDDGNLTDLGAVMSEFPLDPQLAKMLIASCQHNCSNEILSITAMLSVP
QCFVRPNEAKKAADEAKMRFAHIDGDHLTLLNVYHAFKQSSEDPNWCYENFINFRSLKSA
DNVRQQLARIMDRFNLRRTSTEFTSKDYYVNIRKALVQGFFMQVAHLERTGHYLTIKDNQ
NVQLHPSTCLDHKPDWVIYNEFVLTTKNYIRTVTDVKPEWLISLAPQYYDLNNFPQCEAK
RQLELLQQRMETKQYQKGF
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagcgccggattgaagtcggtgagacctacgtcagcaagtccaagaacagggtt
gcggatgcgtcgtccacttcggcatcggcatcggcatcggcatcgacggtggcagcggcc
gccggcactgttgcacagatcctgggcggatttgtgcccagcaagcagccacctacgacg
aatgccctgactgggaagacgtactcgcagcgattccagaacctgtacaagaagcgtatc
gcgttgccggtattcgagtaccaggcggacttcatgcgcctgctgagccagcaccagtgc
attgtgctggtgggcgagacaggctcggggaagaccacccagataccacaatggtgtgtg
gactttgccgtgtccaaaggacgaaagggtgtctcgtgtacgcagccccgtcgtgtggcc
gctatgtctgtggcccagcgcgtgtccgaggaaatggatgtgaatctgggcgaggaggtt
ggctactccattcgttttgaggactgctcttcggccaagaccctgctgaagtacatgacg
gacggtatgctgctccgcgaggctatgtccgaccccatgctggagcagtaccaggtgatc
ctgctcgacgaggctcacgagcgcaccctcgcaactgacatcctgatgggcgtgctcaag
gaggtcatccggcagcgcaacgatcttaagctgattgtcatgtcggccactctcgatgct
ggcaagttccagcagtacttcgacaacgctccccttatgaacgtgcccggtcgcacgcat
cccgtagagatattctatacgccggagccggagagggactacttggaggcagccattcgc
acggtcatccagatacatatgtgcgaggagattgagggtgacattctcatgttcctcacg
ggtcaggaggagattgaggaggcctgcaagcgcatcaaacgggaaatcgacaacctgggc
tcagagattggcgagctgaagtgcattcccctgtactctacgctgccgcccaatctgcag
cagcgcatcttcgaggcggcgcccccgccgaatgccaacggagccattggccgcaaagtt
gtggtgtccaccaacattgcggaaacctcgctgaccatcgatggtgtggtatttgtgatt
gacccgggctttgcgaaacagaaggtctacaatcctcgcatccgcgttgagagcttactg
gtctcgcccatttccaaggcctcggcccagcagcgggctggtcgagcaggtcgtactcgt
ccgggcaagtgcttccgactgtacacggagaaggccttcaagaacgagatgcaagacaac
acctatcccgagattctcaggtccaatttgggcactgtggttctccagcttaaaaagcta
ggcatcgacgacttggtgcactttgactttatggatccccctgcaccggagaccctcatg
cgagcgctggagctgctcaactatctggccgccctggacgacgatggcaacctgacagac
ttgggggcagtcatgtccgagttccccctggatccgcagctcgccaagatgctgatagcc
agctgccagcacaactgctccaacgagatactttccataacggccatgctgtcggttcca
caatgtttcgtgcgtcccaatgaggccaagaaggcggccgacgaggccaagatgcggttc
gcacacatcgatggggatcatttaacgttgctgaatgtctaccatgccttcaaacagagc
agtgaggaccccaactggtgctatgaaaactttataaacttccggtcgctgaagagcgct
gacaacgtgcgccagcagctggcccggattatggatcgcttcaacttgaggcgcaccagc
acggagttcacctcaaaggactactatgtgaacatacgcaaggccctcgtccagggcttc
ttcatgcaggtggcccacctggagcgcaccggtcactatctgactatcaaggataaccag
aatgtgcagctgcacccctcgacctgtctggaccacaagcccgattgggtcatctacaat
gagtttgtgctaaccaccaagaactacatacgcacggtcacagatgtaaagcctgaatgg
ctgatcagcctggccccgcaatactacgacctgaacaacttccctcaatgcgaggcgaag
cgtcagttggagttgctgcagcagcgaatggaaaccaagcagtaccagaagggattttaa
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