Drosophila miranda: 108162916
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Entry
108162916 CDS
T06132
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
dmn
Drosophila miranda
Pathway
dmn04382
Cornified envelope formation
dmn04512
ECM-receptor interaction
dmn04518
Integrin signaling
dmn04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dmn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108162916
04518 Integrin signaling
108162916
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108162916
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
108162916
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dmn04147
]
108162916
00536 Glycosaminoglycan binding proteins [BR:
dmn00536
]
108162916
Exosome [BR:
dmn04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108162916
Glycosaminoglycan binding proteins [BR:
dmn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108162916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108162916
NCBI-ProteinID:
XP_017153385
LinkDB
All DBs
Position
4:17094678..17102124
Genome browser
AA seq
1784 aa
AA seq
DB search
MMLPFWKRLLYAAVIAGALVGANAQFWKTAGTSGSIQDSVRHQSREDPRDSFPIDDSYDI
VDSASIQRGGQPPKNCTAGYAGCVPKCIAEKGNRGLPGPLGPTGPKGVSGFPGQDGPLGD
KGQKGDPGPYGLRGDKGERGSQGIPGLPGVGGVQGSSGNPGLPGINGKDGCDGSDGLPGL
QGLSGMAGPRGFPGSPGGKGDKGEPAKENGNYAKGEKGEPGFTGRSGYAGPQGNPGDKGE
RGDTGPYGSKGLRGDRGIKGEKGDSCFGPLMPGKQGEKGEKGDPAVPIPVTGSERVSGPR
GDPGQKGEVGPYGEKGELGPGGEPGQDGQKGEKGLPGGSGDRGRQGNFGPPGPSGQKGDR
GETGLNGLPGSFGQKGEPGRPGQSGQRGLVGPPGPPGGGRGQPGAPGPKGPRGYTGTPGP
QGLNGADGQPGPQGYVGQKGGSGMPGRPGGEGPPGQKGEKGIGGRVGPQGPVGPIGHTGP
PGPEGLKGDAGTPGYGIQGPKGDDGNPGYPGQKGGKGERGFKGNSGVPGDSKLGRPGTPG
TAGAPGQKGDAGRPGTPGAKGDMGIKGDIGGKCSSCPPGLKGDKGTRGLDGIPGNPGVRG
PPGEPGHQGERGHDGINGQTGAPGEKGEDGLTGAPGATGAPGKGAIINYSQIKTEKGEKG
LPGLPGAAGVKGDRGESGVPGLSGVKGEIGFKGDKGYTGQAGTDGIPGAPGRDGYDGAPG
LSIKGESGSRGMDGLKGDKGTAGYVGPKGEPGTCEASELKIPAKGNKGDRGATGMPGVDG
PIGQKGEIGYRGEKGSTGPQGPVGPVGPRGMTGPRGEKGNIGPIGAAGNPGKDGTRGLPG
RNGDRGQKGEEGIPMPGPPGPQGRDGLQGLKGTRGLPGPQGLPGQEGNAGYPGDKGDAGV
PGIPGRVGAVGEKGDLGPLGPIGQPGPPGIPGIDGVQGRDGSKGEPGNPGLVGMPGNKGD
RGAPGNDGPKGFNGITGSPGKRGPAGIPGISGMKGDKGARGLTGNDGPMGGRGPPGPPGL
LGVKGEPGLLGAPGQRGLDGLNGEKGNQGLPGYDGPQGLPGDASEKGQKGEPGLSGLRGD
PGVSGEPGLPGEKGLPGMAVYGRPGPQGEKGDTGRSGADGINGLNGEKGDIGLPGLSGRN
GEKGSVGLPGIPGAPGIDGQPGLQGAPGPVGYPGAQGYKGQAGLPGLSGIKGDTGPIGPQ
GYIGNAGIKGERGPRGQPGLPATVNVDMLRGEKGSVGERGLTGEKGDQGERGEQGLAGYP
GVKGDQGLEGPRGLNGLNGAPGLKGDAGLVGEPGYPGPVVKGEKGLPGRAGKYGREGLPG
APGIKGERGLPGLAGTPGLVGLPGPIGPAGDKGERGLAGTPGQPGLDGLSGAPGLKGDQG
YPGPKGDRGLAGFEGQKGDKGDQGHAGLPGLAGLAGAKGDTGYPGLDGPEGLQGSPGEKG
FTGPKGRDGRDGIPGLQGQKGEPGMVPPPGPKGEPGKPGREGQKGEPGQPGARGLTGIQG
QRGEKGDRGLIGPSGAIGRPGPKGDRGEQGLVGREGAVGAMGLKGDAGLACSGAQDYLTG
ILVTRHSQNDQVPQCAAGHSQLWTGYSLLYVDGNDYAHNQDLGSPGSCVQRFSTLPVLSC
GQNNICNYASRNDKTFWLSTSAPIPMMPVENYEISKYISRCVVCEAPANVIAMHSQSLEI
PECPSGWEGLWIGYSFLMHTAVGNGGGGQALQSPGSCLEDFRATPFIECNGAKGTCHFYE
TMTSFWMVTLESNDQFEKPQQQTIKSGNLLSRVSRCQVCMKNSS
NT seq
5355 nt
NT seq
+upstream
nt +downstream
nt
atgatgttgcccttctggaagcggctgctgtacgccgctgtcatcgctggagcgttggtt
ggtgcaaacgctcaattctggaagaccgctggcacctctggttctattcaggactcagtc
agacaccaaagcagagaagacccccgggactcatttcccattgatgatagctatgacatt
gtagactcggcgtcaattcagcgcggcggacagccacccaagaactgtacagccggatac
gccggctgtgtgcccaaatgcattgccgagaagggtaaccgcggtctgccaggtccattg
ggtcccaccggacccaagggtgtctcgggctttccgggtcaggacggaccactgggcgac
aaaggccagaagggtgaccccggaccatatggactgcgcggcgacaagggcgagcgtgga
tcgcagggcattcccggtctgccaggcgtgggaggtgttcagggatcgtctggcaatccc
ggcttacccggtatcaacggcaaggatggctgtgatggatccgatggtttgcccggcttg
cagggtctctcgggtatggcaggaccacgtggcttcccgggcagtccgggtggcaagggt
gataaaggtgaaccggcaaaggagaacggaaactacgccaagggtgagaaaggtgagccc
ggcttcacaggacgttcagggtacgcaggaccccaaggcaatcctggtgacaaaggcgaa
cgtggtgacaccggaccgtatggctccaaaggtctgcgtggagatcgtggcattaaggga
gagaaaggcgactcttgctttggacctctgatgccaggaaagcagggagagaagggcgag
aagggtgatccagctgttcctatccccgtcaccggtagtgaacgtgtgtctggcccacgt
ggtgatcccgggcagaaaggagaggttggaccctatggcgagaaaggtgagctcggtccc
ggcggtgagcctggacaggatgggcagaagggcgagaagggcttgcccggcggctctgga
gatagaggtcgtcaaggtaactttggaccaccaggaccttctggacagaagggagaccgt
ggtgaaactggtctaaacggcttgcctggaagtttcggtcaaaagggagagccaggtcgt
cctggtcaatccggtcagcggggcttggtcggtcctccaggaccaccaggtggcggtcgc
ggacagccaggtgctccaggaccgaaaggaccacgcggttatactggcacgcccggtccc
cagggcttgaacggcgctgatggacagccaggaccccagggatacgttggccagaaggga
ggtagtggcatgcccggccgtccgggtggcgagggccctccgggacaaaagggtgagaaa
ggtattggaggacgcgtcggaccccagggccccgtcggacccatcggccacactggacct
ccaggccccgaaggtctaaagggcgatgctggcacccctggctacggcattcaaggtccg
aaaggtgacgatggaaatcctggctatcctggccagaagggcggaaagggcgaacgaggt
ttcaaaggaaattctggtgttcctggcgattcgaaattgggcagacctggcacgcccggc
accgctggtgctcccggacaaaagggtgacgctggccgtcccggtactcctggcgctaag
ggagacatgggcattaagggagacattggcggcaagtgttcctcttgcccacccggtctg
aagggagataagggtacgcgaggtttagatggtattcccggcaatcccggcgttcgagga
ccacctggagaacctggacaccagggcgaacgaggccacgatggaatcaacggacagacg
ggtgctccaggagaaaagggagaggatggtttgactggtgcccctggtgccactggagct
cctggtaagggagcaattatcaactatagccaaataaagaccgaaaagggagaaaaggga
ctgcctggccttcccggagctgcgggtgtaaagggagaccgcggagaaagcggtgttcct
ggtctgtctggagtcaagggagaaataggctttaaaggagacaaaggctacaccggacaa
gctggcacagatggtatccctggagccccagggcgcgatggatacgatggtgctcccggt
ctcagcattaagggagaatcaggcagtcgcggcatggacggtcttaagggtgacaaggga
acagccggatacgtcggaccgaagggagaacccggcacatgcgaggccagcgagctgaag
atcccagcaaagggaaataagggcgaccgtggtgccactgggatgcccggagtcgatgga
ccaatcggacagaaaggcgagatcggataccgcggtgagaagggttcaaccggtcctcaa
ggcccagttggtcccgttggcccccgtggaatgactggaccccgtggcgagaaaggtaac
atcggacccatcggtgctgctggcaatcctggaaaagacggtacccgtggcttgcctggt
cgtaacggagatcgcggtcaaaagggagaagagggaataccgatgcctggaccacccggc
ccacagggtcgcgacggcttgcaaggtctaaaaggaactcgtggcctacccggaccccag
ggtctgcctggacaagaaggaaacgctggctatcccggtgataagggagatgctggagta
cccggtatacctggtcgtgttggcgctgttggcgagaagggagacctcggcccattgggt
ccaattggacagcccggacctcctggtattcctggtattgatggagtgcaaggccgcgac
ggatccaaaggtgaacccggtaatcctggtttggttggtatgcccggcaataagggcgat
cgcggagcacctggcaacgacggacctaaaggcttcaacggaatcaccggctcacccgga
aagcgtggaccggctggaattcccggaatttcaggcatgaagggcgacaaaggagctcgt
ggcttgactggaaacgacggaccgatgggtggacgaggacccccgggaccacctggcctg
ctgggtgttaagggtgagcccggacttctcggtgccccgggacagagaggactggacggc
ttgaatggtgaaaagggtaaccaaggtctgcccggctatgacggaccccagggccttcct
ggagatgcatccgaaaagggacagaagggtgaacctggcctgtctggactgcgcggtgat
cctggagtatccggtgagcctggactgcctggagaaaagggattgcccggtatggctgta
tacggacgacctggaccccaaggagaaaagggtgacactggacgtagtggcgcggacggc
ataaatggattaaatggagagaagggtgacatcggcttgcctggcttatctggaaggaat
ggcgaaaagggatccgttggccttcctggcattcccggagctcccggaattgatggtcag
cctggacttcagggtgctcccggaccagtcggctatcccggcgcccaaggatacaaggga
caggctggcctgcccggtctatccggcatcaagggtgacactggccccattggtcctcag
ggctacattggaaacgctggcatcaagggcgagagaggtccacgtggtcagcctggcctc
ccagctactgtcaatgtcgatatgctccgaggcgagaaaggctctgtgggagagcgcggc
ctgaccggagaaaagggagatcagggagagagaggagagcaaggtctggctggatatcca
ggagtaaagggagaccagggactggaaggtccccgtggcttgaatggactgaacggagcc
cctggactgaagggagatgcgggtcttgtaggtgagcctggttaccctggacccgttgtc
aagggtgagaagggtctgcccgggcgcgccggaaagtacggacgtgaaggccttcccgga
gcacctggcatcaagggcgagcgtggtttgcctggcctggccggtacacccggcttagta
ggtctgcccggacccattggacccgcaggcgacaagggagagcgtggtctggctggtaca
cctggtcagcccggactcgacggattgagtggcgctccaggtcttaagggcgaccaaggc
tatcccggacctaagggagatcgtggattggctggctttgaaggacagaagggtgataag
ggtgaccagggacacgccggcctgcccggtctggctggattagctggtgccaagggcgac
actggatatcccggcttagacggaccagaaggactacagggctccccaggtgagaagggc
ttcaccggacccaaaggacgcgacggccgcgacggaattccaggtctgcaaggacaaaag
ggtgaacccggcatggtgccgccgccagggcccaagggcgaacctggcaagcctgggcgt
gaaggtcaaaagggcgaaccaggccagcccggtgcccgtggcctgaccggaatccaagga
cagcgtggagaaaagggtgatcgcggtctgatcggtccaagcggagccatcggacgtccc
ggacctaagggcgaccgtggagagcaaggtctggttggacgagagggtgccgtcggcgcc
atgggtctgaagggtgatgcaggtctagcctgtagtggcgcccaggactacctcaccggc
attcttgtgacacgccacagtcagaacgaccaagtgccgcaatgcgctgcgggtcactcg
cagctctggactggttattctctactctacgtggatggcaatgactacgcccacaaccaa
gatctcgggtccccgggctcctgtgtgcaacgcttctctactctaccggtactgtcctgt
ggacagaacaatatctgcaactacgcgtcgcgcaatgataagaccttctggctatcaaca
tcggcccccattcccatgatgccggtggagaactacgagattagcaaatacatctcgcgc
tgtgtggtctgcgaggcgcctgccaacgtcattgccatgcacagccagtctcttgaaata
cccgaatgcccctcaggttgggagggtctctggattggctacagtttcctcatgcacacg
gccgtgggcaatggaggcggtggccaggctctgcaatcgcctggctcgtgcctagaggac
ttccgtgcaacaccgttcatcgagtgcaacggcgccaagggcacctgccacttctacgag
acaatgaccagcttctggatggtcactctggagtcgaacgaccagtttgagaagccccag
cagcagacgatcaagtctggcaacctgctgtcccgcgtctccaggtgtcaagtctgtatg
aagaactcgtcgtag
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