Drosophila miranda: 117190128
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Entry
117190128 CDS
T06132
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dmn
Drosophila miranda
Pathway
dmn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dmn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117190128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmn03019
]
117190128
03041 Spliceosome [BR:
dmn03041
]
117190128
Messenger RNA biogenesis [BR:
dmn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117190128
Spliceosome [BR:
dmn03041
]
Complex B
Other components
Prp19-related factors
117190128
Complex C
117190128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
TPR_14
HAT_PRP39_C
HAT_PRP39_N
Mad3_BUB1_I
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
117190128
NCBI-ProteinID:
XP_033251102
LinkDB
All DBs
Position
Y
Genome browser
AA seq
575 aa
AA seq
DB search
MVSLLAFVGAAEPFCEASFAQFEELSFNKRMEEVAKNEEATEEDDIDVELRLSRFEYLME
RRLLLLNSVLLRQNPHNVHEWHKRVNLYEDKPTEIINTYTEAVQTVQPKLAVGNLHTLWV
GFAKFYESNGQVEDARVVFERGTEVEYVKVADLLRQQQFEAALKLMQRATAMPKRKVAYH
DDSETVQSRLHRSLKVWSMYADLEESFGTFKTCKAVYESIIDLKICTPQVIINYGMFLEE
HNYFEDAYRAYEKGIALFKWPNVYDIWNSYLSKFLARYGGTKLERARDLFEHLPALREAG
GGARPGPACHVLLRSRHVRRQGREDVRHVQHIREEGRRDLRPATHQGDLREGHRGSTRAA
YAPHVRQIRRAGDEAGLGGSSQGHLRSQVCDPRITADFWHTWKEFEVRHGNEDTMREMLR
IKTYNTQVNMMAAQFVNTNTNGVAADAGAGSGPDAMRLLEEKARQAAADAKQKPAEKAAS
NIMFVRGETQGGAKGKENTVFNPDEIDIGDSEDDYDDEEEDPQQPSGDQAEAGQATTKTD
DEGLIMKKLRLEQKAIPAKVFGSLKPTNQSDSDEG
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atggtcagtcttttggcctttgttggggcagcagagcccttttgcgaggccagctttgcg
cagttcgaggagctgtcgtttaacaagcgcatggaggaggtggccaagaacgaggaggcc
accgaggaggacgacatcgatgtggagctgcgcctgtcgcgcttcgaatacctcatggag
aggcgtctgctgctgctgaacagtgtcctgctgcgccagaatccgcacaacgttcacgag
tggcacaagcgggtcaacctgtacgaggacaagcccacggagatcatcaacacctacacc
gaggccgtgcagacagtccagcccaagctggcggtgggaaatctgcacaccctctgggtg
gggtttgccaagttctacgagtccaatggccaggtggaggacgcccgcgtggtcttcgag
cggggcaccgaggtggagtacgtcaaggtggcggatctgctgcgccagcagcagttcgag
gcagccctcaagcttatgcaacgtgccacggccatgcccaagcggaaggtggcgtatcac
gacgactcggagacagtgcagtcgcgcctccacagatccctgaaggtgtggtccatgtac
gccgatctggaggagtcctttggcaccttcaagacctgcaaggccgtctacgagagcatc
atcgacctgaagatctgcacgccgcaggtgatcatcaactatggcatgtttctcgaagag
cacaactacttcgaggatgcctatcgggcctacgagaagggcattgccctgtttaagtgg
ccgaatgtgtacgacatctggaactcgtatctaagcaagttcctcgcgcgctacgggggc
acaaagctggagcgggcgcgcgacctcttcgaacatttaccagctctacgcgaagctgga
ggaggagcacggcctggcccggcatgccatgtccttctacgatcgcgacacgtccgccgt
caaggaagagaagatgttcgacatgtacaacatattcgtgaagaaggccgtcgagatcta
cggcctgccacgcaccagggagatctacgagaaggccatcgaggctctacacgagcagca
tatgcgccacatgtgcgtcaaattcgccgagctggagacgaagctgggctaggtggatcg
agccagggccatctacgctcacaggtgtgcgatccccgcatcacggcggacttctggcat
acctggaaggagttcgaggtgcgtcatggcaacgaggatacgatgcgtgaaatgctgcgg
atcaagacctacaacactcaggtcaacatgatggctgcccagtttgtcaacacgaacacg
aatggtgtggctgccgatgctggtgctggctccggaccggatgccatgcggctgctcgag
gagaaggcccgccaggcggcggccgatgccaagcagaagcccgccgagaaggctgcctcc
aatatcatgtttgtgcgcggcgagacccagggcggggccaagggcaaggaaaatacagtc
ttcaatcctgatgagattgatattggcgacagcgaggacgactacgacgatgaggaggag
gacccgcagcagccgagtggagaccaggccgaggcaggccaggccacaaccaagaccgat
gacgagggcctcatcatgaagaaactgcgcctcgaacaaaaggccataccggccaaggtc
tttggcagcctcaagccgacaaatcaatccgattccgatgagggataa
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