Drosophila mojavensis: Dmoj_GI16439
Help
Entry
Dmoj_GI16439 CDS
T01062
Name
(GenBank) uncharacterized protein
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
dmo
Drosophila mojavensis
Pathway
dmo03008
Ribosome biogenesis in eukaryotes
dmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Dmoj_GI16439
09123 Folding, sorting and degradation
03018 RNA degradation
Dmoj_GI16439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmo03019
]
Dmoj_GI16439
03009 Ribosome biogenesis [BR:
dmo03009
]
Dmoj_GI16439
03016 Transfer RNA biogenesis [BR:
dmo03016
]
Dmoj_GI16439
03036 Chromosome and associated proteins [BR:
dmo03036
]
Dmoj_GI16439
Messenger RNA biogenesis [BR:
dmo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
Dmoj_GI16439
mRNA degradation factors
5'-3' decay
5' exonucleases
Dmoj_GI16439
Ribosome biogenesis [BR:
dmo03009
]
Eukaryotic type
Pre-60S particles
RNases
Dmoj_GI16439
Transfer RNA biogenesis [BR:
dmo03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
Dmoj_GI16439
Chromosome and associated proteins [BR:
dmo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
Dmoj_GI16439
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Yuri_gagarin
Motif
Other DBs
NCBI-ProteinID:
EDW06116
UniProt:
B4L6X0
LinkDB
All DBs
AA seq
1254 aa
AA seq
DB search
MGVPKFFRYISERYPCLSELAREHSIPEFDNLYLDMNGIVHNCSHPDDSNIHFHLEETQI
FQDIYNYIDKLFYLIKPQKLFFLAVDGVAPRAKMNQQRSRRFRSAREAEQLEAKARQRGE
KREHERFDSNCITPGTEFMVRLQAGLRCFLRTKISQDPLWQKCRVILSGQETPGEGEHKI
MDYIRYMKAQPTFDPNTRHCLYGLDADLIILGLCTHELHFVVLREEVKFGRNVKRTSVEE
TRFFLLHLGLLREYLELEFHELSTPEQKLDVAQLIDDWVLMGFMVGNDFIPHLPCLHISS
NALPLLYKTYIRIYKQLGGNINEHGKLNLDRLQQFLHALSEVELQLFEEHSDDLKYMNAK
TEAFDVDIDDIKNDSGESYNEDLAALIDESMKLYEDDDDDVDPDDEQAVLRSEFQNYKRN
YYRNKFKNEMHEDLISELSYHYISAIQWVLDYYYRGVQSWDWYYPFHYAPFISDLNNIKN
TKVNFKMGKPFLPFQQLLAVLPAASVNLLPMAYHDLMLKPNSPLAEFYPTEFESDLNGKK
HDWEAVVLIPFIEEKRLLSAMADCEPQLSVEERERNRHGPMYQYDYNAKSQGPMKGLAPL
KPLQNVFCTELARWSDEIALNSPRTVCVELANAARHVFFPGFPTMKHLEFDFELRHDRVK
VFEQPSRNQSMVLMPRQREAQDSLQSVAAQHLGQVVYIGWPHLIKAKVESVATRDQVVDR
DGIRANEPRRFDSDCKSLEEHFTGRMAIKFPNYDVLIYIRTYIGSSVEFGKRGNVFMKDS
WSSAITAYPAQGVVSDIKVRDNLHAQFNKIEQLFPTGSTVFFIGKPYAGSEGTVLDPMLV
YSCGRVQVNIRVGPEPQLMPARLLQEERDRDFMNSYKVCRELNVNSKCLGRLTGTVWVVL
GPRREKMENVSKHNIGLQLKYPRLNEERAGYCRRINNQWFYSSLAVDLMHTYIENFPAIV
DYFSRSGDRGEFIYEEDIYPHAMGQHLIEDVANWVRQQPHMKVDRITCGSRTVCKETVEL
LIKAVDELRMLPVKNVKLQVKPHLLVKPNVTLPDVYRTSGAVRLFDRVVVVRTIYMVPVG
ITATVIGIHPVSDPNPVRLECLNAVETFCELLFDRPVSNCGDIHGIADERIYKVPESALV
IISSLENDEKQQPKQQANMAVSSPLKTRTDALRRNWRDQQQQPRFVTAAGSKYNPITMNT
RIADEFYWPSDAPATSSASGSTSGSTAASTSAQAAATAATAAAASASAAALNQE
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtacccaagttttttcgttatatcagcgaacgatatccctgcctcagtgaattg
gcgcgtgagcatagtattcctgagttcgacaatctctacctggacatgaacgggattgtc
cacaactgctcgcacccggatgatagtaatatccacttccatttggaggagacgcagatc
tttcaggacatttacaactacatcgacaagctcttctacttgatcaagccgcaaaagttg
tttttcctggccgtagatggtgtcgcaccacgtgccaaaatgaatcagcagcgcagccgg
cgctttcgctcggcccgcgaggcggagcaactggaggcgaaggcacggcagcgtggcgag
aagcgtgagcatgaacgattcgatagcaactgcattacgccgggcacagagttcatggtg
cgattgcaggccggcctgcgctgctttctgcgaacgaaaatctcgcaggatcccctctgg
caaaaatgtcgggtcatactcagtggccaggagacacccggcgagggggagcacaagata
atggactacatacgctacatgaaggctcagcccaccttcgaccccaacacgcgtcactgc
ctctatggcctggatgctgatttgattatccttggactctgtacccacgagctgcatttc
gttgtgctgcgcgaggaggtgaagtttggccgaaacgtgaagcgcacctccgtggaggag
acgcgcttcttcttgctccatctgggcctgttgcgcgagtatctagaactggagttccac
gagctttcgaccccggagcagaagctcgatgtcgctcaactgatcgatgactgggtcctg
atgggcttcatggtgggcaatgatttcataccgcacttgccctgcctgcatatctcgtcg
aacgccctgcccttgctctacaagacgtacattcgcatctacaagcaactgggcggaaat
atcaatgagcatgggaaactgaatttggatcgattgcagcagtttctgcacgctctgagc
gaggtagagcttcagctattcgaggagcacagcgacgatctgaaatacatgaatgccaag
acggaggcgttcgacgtggacattgacgacatcaagaatgacagcggtgagagctacaat
gaggatcttgctgcgctcatcgatgagagtatgaagctctacgaggacgacgacgacgat
gtggatcccgacgacgagcaggcagtgctgcgcagcgagttccagaactacaagcgcaac
tattaccgaaataaattcaagaacgagatgcatgaggacctgatttccgagctgagctat
cattatatcagcgccattcaatgggtactcgattattactaccggggtgttcagagttgg
gactggtattatcccttccactatgctccgttcatcagtgatttgaacaacattaagaat
accaaagtgaacttcaagatgggcaaaccctttttgcccttccaacagctgcttgccgtg
ctgccagcggccagcgtcaatctcctgccgatggcatatcatgacctgatgctgaagccg
aatagtccgctggctgagttttaccccacggaattcgaaagtgatctgaatggcaagaag
cacgactgggaggccgtggtgctgatacccttcatcgaggagaagcgcctgttgagtgcc
atggccgactgtgagccgcagctgagtgtcgaggagcgcgaaaggaatcgccatgggccg
atgtaccagtacgattacaacgcaaagtcccagggtccaatgaagggcctggcgccactc
aaacccctgcagaacgtgttctgcacggagctggcccgttggtccgatgaaatcgccctc
aattcgccaaggactgtgtgcgtggagctggccaatgcggcccgccacgtcttctttcca
ggctttcccacgatgaagcatttggaattcgattttgagttgcgccacgatcgtgtcaag
gtcttcgagcagccgagccgcaatcaaagcatggtcttgatgccgcgccagcgcgaagcc
caggattccctccagtcggtggcggcccagcacctggggcaggtggtgtacattggctgg
ccgcacttgatcaaggccaaggtggagagcgtcgcgacgcgcgaccaagtggtggatcgc
gatggcatacgcgcgaatgagccgcgacgcttcgactcggactgcaagtcgctcgaggaa
catttcaccggccgcatggccatcaagttccccaactacgatgtgctcatctatatacgc
acctacatcggcagctcggtggagttcggcaaacgcggcaacgtcttcatgaaggactcg
tggagcagtgccataacggcgtacccggcacaaggcgtggtctccgacatcaaggtgcgc
gacaacttgcacgcgcagttcaacaaaatcgaacagctcttcccgacgggcagcacggtc
ttcttcattggcaagccgtatgcgggcagcgagggcaccgtgctggatccgatgctcgtc
tacagctgtggccgtgtgcaggttaacatccgcgtgggccccgagccacagctgatgccc
gcacgcctgctgcaggaggagcgcgaccgcgacttcatgaactcgtacaaggtgtgccgt
gagttgaatgtgaacagcaaatgcctgggccgtctcacgggcaccgtctgggtggtgctc
ggcccgcgccgtgagaaaatggagaacgtctccaagcacaacattggactgcagctgaag
tatccccgtttgaacgaggagcgcgccggttactgccgccgcatcaacaaccagtggttc
tattcctcgctggccgtcgatctcatgcatacctatattgagaactttccggccattgtc
gactacttctcgagaagcggcgatcgcggcgagttcatctacgaggaggacatctatcct
cacgcgatgggccagcatctcatcgaggacgtggccaactgggtgcgccagcagccgcac
atgaaggtggatcgcatcacttgcggctcgcgcaccgtttgcaaggagaccgtcgagctg
ctgataaaggctgttgatgagctgcgcatgctgcccgtcaagaatgtcaagctgcaggtg
aagccgcacctgctggtcaagccgaacgtgacgctgcccgacgtctaccgcacgtcgggc
gcagtgcgcctcttcgaccgtgtcgtggtcgtgcgcaccatctacatggtgcccgtgggc
atcaccgccaccgtcatcggcatacacccggtctctgacccgaatccagtgcgtctggag
tgcctgaacgcagtggagacgttctgcgaactgctcttcgatcggccggtgtccaactgc
ggcgacatacacggcatagctgacgagcgcatctacaaggtgccggagagcgccttggtc
atcatcagctcgctcgaaaacgacgagaagcagcagccgaagcagcaggcaaacatggca
gtctcgtcgcccctcaagacccgaacggatgccttgcgccgcaactggcgcgaccagcag
cagcagccgcgctttgtgacggctgcgggcagcaagtacaatccgatcacgatgaacacg
cgcatcgccgacgaattctattggcccagcgatgcgccagccacgagctccgcgtccggc
tccacgtctggctccactgctgcctcgacttcggctcaagcagcagccacagcagccaca
gcagccgcagcatctgcatcagctgctgctctaaatcaagag
DBGET
integrated database retrieval system
