Drosophila mojavensis: Dmoj_GI24507
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Entry
Dmoj_GI24507 CDS
T01062
Name
(GenBank) uncharacterized protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
dmo
Drosophila mojavensis
Pathway
dmo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dmoj_GI24507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmo03019
]
Dmoj_GI24507
Enzymes [BR:
dmo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Dmoj_GI24507
Messenger RNA biogenesis [BR:
dmo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
Dmoj_GI24507
mRNA degradation factors
3'-5' decay
Ski complex
Dmoj_GI24507
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
ResIII
MTR4-like_stalk
RhopH3_C
Motif
Other DBs
NCBI-ProteinID:
EDW14893
UniProt:
B4KDB1
LinkDB
All DBs
AA seq
1194 aa
AA seq
DB search
MHEIRGEDNHEKLRNYILNPDISIHDPVPDVVPRKLNEMRLLHIPKCPGSTKLIPRRDLI
TGEILEFVEVDVEDVGANANNSMSMQREPGLLEEITRGSPMNYPFWPGGFDAKEQKSQIA
KFDVDSFELGEKLLTVPPGFSSGHDFSLHTKKVMETATITASNVDLLENLEEDLDVQQWL
QITRSDSEAAGTNAPQRDLQFPAEFKDVDDDIMNADLKPVLNISTTTKTFSSDWAEMVDI
SQPITNFKEQIPCPAMEFPFELDVFQKQAILKLEERQYVFVAAHTSAGKTVVAEYAIALS
KRDLTRTIYTSPIKALSNQKYRDFRKTFKDVGLITGDLQIEPTASCLIMTTEILRSMLYC
GSDITRDLEYVIFDEVHYINNPERGHVWEEVIILLPDHVNIIMLSATVPNTMELADWVGS
TKKRKVYVISTLKRPVPLMHYLYTGAGGKSRDDIFLLVDAQGRFLQGNYEKAVERKKEMQ
SKSKTGGPKNYVGSKQDQCTWIGLIDFLKRNNKMPVVAFTLSRNRCDTNVAALQSVDLNT
AVEKGSVQKFFLQCLAKLKPPDRTIPQVLALKDSLERGIGVHHSGILPILKEIVEMLFQN
GLVKLLFATETFAMGVNMPARTVIFDSHKKFDGTEMRNLKPGEYIQMAGRAGRRGHDENG
TVILLCKGQVPPSMELRPMILGLPEKLQSQFILRYAVILTCLRIESIKVEDIMQFSFKEF
NQKLQLPTQQKQLQLAEAKFANLPNLGEHLQPLIYFYDKSVEYWKEKHRIMKFILTQPKI
QKEMKVGRIIVITQGKHYNKLAILLNVKSVLGKDTVYKVLVLDHQFKNNDYDNVNRGELY
YKILSLTPQHKFFHPEGIGGHAVLDIRAVDILTITKSTIKVDADVIIRNWEQRQLERFKD
SPPSATVVKAVTELHQLNEAYNANPDSIKYINMSKEINVNAETEVAMLNYVDHLARQVGN
VLPHTNIAGFEQEFAKVYERRMLEISIEELRFKNSAKNLTLYPDYCNKLQVLRALNYIDD
QNEVTLKGKVACEMGQNELLITELILCNMFNDLEPAEIAALLSGLVFQAKIQGEPVIPEP
LKKCVAAFEQINDTILAEEQRCQAAVEAENNLNFGLLEVVYEWAKNKPFAEIMKLTEVQE
GIIVRCIQQLDETLRDVKTAAIRIGNPGLQSKMEEASAAIKRDIVFTASLYTEL
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgcatgagattcgcggcgaggacaaccatgaaaaacttcgcaattacatacttaatccg
gatatatccattcatgatccggtgcccgatgtagtgccgcgtaaattgaatgaaatgcgc
ctgttgcacattcccaaatgcccgggaagtacaaaactaattccacgtagggatttgatt
accggcgaaatactcgagttcgttgaggtggatgtggaggatgtgggggcaaatgccaat
aattcaatgtccatgcagcgcgaaccgggtctgctggaagaaataacgcgaggctcgccc
atgaactatcctttctggccgggcggcttcgatgccaaagagcagaagtcccagattgct
aaattcgatgtggatagctttgagctgggagaaaagctgctaaccgtgccgccgggcttt
tcaagtggtcatgacttctcattgcacacgaaaaaagttatggaaacggctaccatcacc
gccagcaatgtagatttgctagagaatctagaggaagacctcgacgtacagcagtggctg
caaataacgcgaagcgacagcgaggccgccggcacaaacgcgccccagagggatcttcaa
tttccagcagagttcaaagacgtcgatgatgatattatgaacgcagacctgaagcccgtc
ctcaatatatcgactactacgaaaacattcagcagtgactgggcagaaatggtagacatc
agccagcccatcaccaacttcaaggagcaaataccctgtccagccatggagtttcccttc
gagctcgatgtattccaaaagcaggctattcttaagctggaggaacgtcaatatgtgttc
gtggcggcgcacacatctgcaggcaagaccgtggtggccgagtatgccattgcgttatcc
aagcgggatctgacgcgaaccatttacacgtcgcccatcaaggcgctatccaatcaaaag
tatcgcgacttccgcaagacattcaaggatgtgggactcatcacgggtgatctgcaaatc
gagcctaccgcctcgtgcctcattatgaccaccgagatattgcgttccatgctttattgt
ggcagcgatataacacgggacttggaatatgtcattttcgatgaggttcactatattaac
aatccggaacgcggccacgtctgggaggaagtcatcatactactgccagaccatgtcaat
attattatgctcagtgccacagtgcccaataccatggaactggctgattgggtaggcagc
accaagaagcgcaaggtgtatgtcataagcacgctgaagcgtccagtgccattgatgcat
tatctctacactggcgctggcggcaagagtcgtgatgacatttttctgctggttgatgcc
cagggtagattcctacagggcaactacgagaaggctgtggagcgcaagaaggaaatgcaa
agcaaatcgaagacgggcggtcctaaaaactacgtgggcagcaaacaggatcagtgcact
tggattggactgattgatttccttaagcgaaacaacaagatgcccgttgtggccttcact
ttgtcccgcaaccgctgcgacaccaatgtggctgccctgcaatccgtggatctcaatacg
gcagtggagaagggctcagtgcagaagttcttcctccaatgcctggctaagctgaagccg
cctgaccgcactataccacaggtgctggcgcttaaggattcgctggagcgtggcattgga
gtccatcatagcggcattttgccaatcctcaaggagatcgtcgagatgctcttccaaaac
gggctcgtcaagctgctctttgccaccgaaacttttgccatgggcgttaatatgccggcc
cgtacagtcatcttcgattcgcacaagaagttcgatggcactgaaatgcgcaacctgaaa
cccggcgagtacatacaaatggccggacgtgctggacgacgtggccacgatgagaatggc
accgtcatcctgctatgcaaaggtcaagtgccaccgtcaatggaactgcggcctatgatt
ctgggcttacccgagaagctgcagtcgcaattcattctccgttatgccgttatactgaca
tgtctgcgcatcgagagcatcaaggtggaggacatcatgcagttcagcttcaaggagttc
aatcagaaattgcagctacctacacagcagaagcagctgcagctggccgaagcaaagttt
gctaatctgcccaaccttggcgagcaccttcagccactgatctatttctatgacaagtcc
gttgagtactggaaggagaagcatcgcattatgaaattcattttgactcagccgaaaatt
caaaaggaaatgaaagtgggacgcatcatcgtcatcactcagggcaagcattacaataag
ctggccatattgcttaacgtcaagtccgtgctaggcaaggataccgtctacaaggtgtta
gtgctggaccatcaattcaagaacaacgactacgacaacgtaaatcgcggtgagctttac
tacaaaatcctctcattgacaccacagcacaaattcttccatccggagggcattggagga
cacgctgtgctagacatcagagccgttgatatcctaacgattacaaaatcaacaattaaa
gtggatgctgatgtcataatacgcaattgggagcaacggcagttggaacgctttaaggat
tcgccgcctagcgcaacagtcgtcaaggccgtcacggagctgcatcagctaaatgaagca
tacaatgccaatccggacagcatcaaatacatcaacatgtccaaggaaataaacgtaaat
gcggaaaccgaagtagctatgctgaactatgtggatcatctggcacgccaggtgggcaac
gtgctgccgcataccaatattgccggctttgaacaggagttcgccaaggtgtacgagcgt
cgtatgttagagattagcattgaggagttgcgtttcaagaattcggcaaagaatttaacc
ctttatccggattactgcaacaagctgcaggtgttgcgagccctcaattatatcgatgac
cagaacgaggtgacactcaagggcaaggtggcttgtgaaatgggccaaaatgagctgctc
attacagagttaatactctgcaatatgtttaatgatctggagccggcggaaatagctgca
ctattgtcgggtctggtgtttcaggccaaaattcagggcgaacctgttatcccagagcca
ctaaagaaatgtgttgccgcgttcgagcaaatcaacgataccatcttggccgaggaacag
cgctgtcaagcggcagttgaggcagaaaataatctaaattttggtctgctcgaggttgtc
tacgagtgggccaagaacaagcctttcgctgagatcatgaaattaaccgaggtacaggaa
ggcatcatagtgagatgtattcagcagttggacgaaacacttcgggatgttaaaactgca
gccattcgaattggtaatcccggcttgcagtctaaaatggaagaggcctcggcggccata
aagcgggatattgtattcacagccagtttgtacacggagctctaa
DBGET
integrated database retrieval system
