Desulfoferula mesophila: FAK_10720
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Entry
FAK_10720 CDS
T09861
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dmp
Desulfoferula mesophila
Pathway
dmp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FAK_10720 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmp03019
]
FAK_10720 (pnp)
03016 Transfer RNA biogenesis [BR:
dmp03016
]
FAK_10720 (pnp)
Enzymes [BR:
dmp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FAK_10720 (pnp)
Messenger RNA biogenesis [BR:
dmp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FAK_10720 (pnp)
Transfer RNA biogenesis [BR:
dmp03016
]
Prokaryotic type
tRNA degradation factors
FAK_10720 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
BEQ14006
UniProt:
A0AAU9EJ43
LinkDB
All DBs
Position
1213927..1216095
Genome browser
AA seq
722 aa
AA seq
DB search
MIKKVSTTINGLDLSIETGKIAKQAGGAVMVTYGETVVLVTATGDSNMREGIDFLPLTVD
YQELSYAAGRIPGNFFRREMGRPSEKETLTSRLIDRPVRPRMHKGWSYETQIIANVYSAD
RVNEPDVLALTGASAALCISDVPFDGPIAGVRVGRVNGEFVVNPTAAQRAESDLDLIVAG
SRDAVVMVEGGAELVPEDVVLEGIWFGHASLQPLLDIQEELAAAVGKPKREYNKPVEDTE
LKAKVSKLAAEGVKKVLATAPKLERYGIKRAVKKEVVAAMGEEAAGREGKVKDIVEDLVS
EGMRSMILEQGRRVDGRDFVTVRPISCEVGILPRTHGSALFTRGETQAIVTTTLGTSGDE
QRIESVTKEDSFRDFLLHYNFPPFCVGEAKMLRGPGRREIGHGALARRSLQKVLPAKESF
PYTIRVVSDITESNGSSSMASVCGGSLSMMDAGVPLSRAVAGVAMGLIKEGDKTAVLTDI
VGDEDHLGDMDFKVTGSAEGIAAVQMDIKISGINKEVMAQALAQAKDGRLHILSKMAEAI
TQPRGAISNWAPRITTIKIPVERIKDIIGPGGKIIRGMQMETGAKIDVEDDGTVHVAAVD
GEAGDKALAMIKELTQDVEEGAVYEGTVVKIMDFGAFVEILPGRDGLVHISELDHHRVRA
VTDVLKEGDKVKVKVLGVDDRGKVRLSRKALLPVPEGAPQDDDRPPRDDRPPRRGGDRPR
RD
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaaaggtatcgacgacgatcaacggtctggacctgtccattgagaccggcaag
atcgccaagcaggccggcggcgcggtcatggtgacctacggcgagaccgtggtcctggtg
accgccaccggagacagcaacatgcgcgagggcatcgactttttacccctcaccgtggac
taccaggagctgtcctatgccgcgggccgcatcccgggcaactttttccggcgcgaaatg
ggccgccccagcgagaaggagaccctcaccagccgtcttatcgaccggccggtgcgtccc
cgcatgcataagggctggagctacgagacccagataatcgccaacgtctactcggccgac
cgggtgaacgagccggacgtgttggccctcaccggtgccagcgccgccctgtgcatcagc
gacgtgccctttgacgggcccatcgccggggtgcgggtgggccgcgtgaacggcgagttc
gtggtcaaccccaccgccgcccagcgggccgaatccgacctggacctcatcgtggcgggt
agccgcgacgcggtggtcatggtggaaggcggcgccgagctggtgcccgaggacgtggtg
ctggaaggcatctggttcggccacgcctccctgcagcccctgttggacatccaggaggag
ctggccgccgcggtgggcaagcccaagcgcgagtacaacaagccggtggaagacaccgag
ctcaaggccaaggtcagcaagctggccgccgagggcgtcaagaaggtgctggccaccgcg
cccaagctggagcgctacggcatcaagcgcgccgtgaaaaaagaggtggtcgccgccatg
ggcgaagaggccgccggccgcgaaggcaaggtcaaggacatcgtcgaggacctcgtctcc
gagggcatgcgctccatgatcctggagcagggccgccgggtggacggccgcgacttcgtc
accgtgcgccccatctcctgcgaggtgggcatcctgccgcgcacccacggctcggccctg
ttcaccaggggcgagacccaggccatcgtgaccaccaccctgggcaccagcggcgacgag
cagcgcatcgagtcggttaccaaggaagacagcttccgcgacttcctgttgcactacaac
ttcccgcccttctgcgtgggcgaggccaagatgttgcgcggccccggccgccgcgagatc
ggccacggcgccctggcgcggcgcagcttgcaaaaggtgctgcccgccaaggagtccttc
ccctacaccatccgcgtggtcagcgacatcaccgagtccaacggctcgtcgtccatggcc
agcgtgtgcggcggctccctgtccatgatggacgccggggtgcccttgtccagggcggtg
gccggcgtggccatgggcctgatcaaggaaggcgacaagaccgcggtgctcaccgacatc
gtgggcgacgaggaccacctgggcgacatggacttcaaggtcaccggctccgccgagggc
attgccgccgtgcagatggacatcaagatatcgggcatcaacaaggaagtcatggcccag
gccctggcccaggccaaggacggccgcctgcacatcctgtccaagatggccgaggccatc
acccagccccgcggcgccatcagcaactgggctccgcgcatcaccaccatcaagatcccg
gtggagcgcatcaaggacatcatcggccccggcggcaagatcatccgcggcatgcagatg
gagaccggcgccaagatcgacgtggaagacgacggcacggtgcacgtggccgccgttgac
ggcgaggccggcgacaaggccctggccatgatcaaggagctgacccaggacgtggaggaa
ggcgcggtctacgaaggcaccgtggtcaagatcatggacttcggcgctttcgtggagatc
ctgcccggccgcgacggcctggtgcacatcagcgagctggatcaccaccgggtgcgcgcg
gtcaccgacgtgctcaaggaaggcgacaaggtcaaggtcaaggtgctgggcgtggacgac
cgcggcaaggtgcgcctgagccgcaaggccctgctgcccgtgcccgagggagcccctcag
gacgacgatcgtccgccccgcgacgaccgtcccccccggcgcggcggagaccgtccccgg
cgcgactaa
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