Desulfoferula mesophila: FAK_27980
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Entry
FAK_27980 CDS
T09861
Name
(GenBank) ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dmp
Desulfoferula mesophila
Brite
KEGG Orthology (KO) [BR:
dmp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dmp03016
]
FAK_27980
Enzymes [BR:
dmp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FAK_27980
Transfer RNA biogenesis [BR:
dmp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FAK_27980
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
BEQ15732
UniProt:
A0AAU9F459
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All DBs
Position
3014540..3016525
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AA seq
661 aa
AA seq
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MSDPIGQLVDFIEKNRVELGLVVAAKKGRLNLLTAGGRQTTLNTNRVLYMSPAAMGSEAT
REAQAQYLGEVLCARDELAAQVNVEELWELVYEETDPLSLKDLAQLAFGRPLSDDQVSAT
LRALFNERIHFRLAGSQFLPYSPEQIEAKRLQAEREQARQAQVAEGVDFLRNLPDEGPLP
QPPEELGRLLVDYLVFQEECRQAKLAKEVLAGAEVGGAKKLFRLLVSLGVLEPHHNLELI
RQGISGEFSAEAQDQARELDPNPSQGGARTDLTDLYTFTIDGNFTTDFDDALSFEPDDNG
GGTLGVHITDAGAIMPLEGPLEDEARTRATSLYLPDDRLPMLPPRLSEDQLSLRQGELRP
ALSVLARLDAEGRLIDYRLERSLLKVHKRLTYDEADGMLESDARLAGLHAICHALRRRRG
EAGAYFLPLPEVLVGVDPATKEVWVRRVDRNGPSREMVAETAILGNWLFALFLADSGAPA
LFRTQAKPSEPIEERDPSDVYHHFKQRRLLNRVEITAKPGLHSSLGVHPYTHATSPIRRY
LDLVMQRQIGSILCGGPPLYSAKELEELAMEVGPTVRRAMRVRQVRQRYWLLQWLRQRQD
QPQTAVVMERQMRRWQLLLTDIMMLVNIPIRAGQELSPGQEVQVMVERVDPFDDILRVKL
V
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaccctattggccagctagtcgatttcatcgagaaaaaccgcgttgaactgggt
ttggtggtggcggccaagaaagggcggctcaatctgctcaccgccggcggccgtcagacc
accctgaataccaaccgggttttgtacatgtcccctgccgccatgggctcggaggccacc
cgggaggcgcaggcacaatacctgggcgaggtgctctgtgcccgcgacgaattggccgct
caggtgaacgtagaggagttgtgggagttggtctacgaggagaccgatcccctgtcgcta
aaggatctggcccagttggcctttggccgtcccctgagcgacgaccaggtctcggccacc
ctccgggccctgttcaacgaacgcatccattttcgtctggccggcagccagtttctgccc
tacagccccgagcagatcgaggccaagcgcctgcaggccgagcgggagcaggcccgtcag
gcccaggtggccgaaggggttgattttctcaggaacctgcccgatgagggccccctgccc
cagcccccggaagaactgggccgattgttggtggactacctggttttccaggaagagtgc
cgccaggccaagctggccaaagaggtgttggccggggccgaggtgggcggagccaaaaag
ctgtttcgcctgctggtgagcctgggggtgctggagccccaccacaacctggagctgatc
cgccagggcataagcggggagttctccgccgaggcccaggaccaggcccgggagctagac
cccaatcccagccaaggcggggcgcgcaccgacctcaccgacctctacactttcaccatc
gacggcaatttcaccaccgacttcgacgacgccctgtcctttgagccggacgataacggc
gggggcacgctgggggtgcacataaccgacgccggggccatcatgcccctcgagggcccc
ttggaagacgaggcccgcacgcgggccacctctttgtacctgcccgacgaccgcctgccc
atgctgcccccgcgcctgagcgaagaccagctttccctgcgccagggggagctgcgccct
gccctgtcggtgctggcccggctggacgccgagggcaggctcatcgactaccgcctggag
cgcagcctattgaaggtgcacaagcgcctgacctacgacgaggccgacggcatgctggaa
agcgatgcccgcctggccgggctgcacgccatatgccacgccctgcgccggcgccggggc
gaggcgggggcctactttttgcccctgcccgaggtgctggtgggggtggacccggccacc
aaggaggtctgggtgcgccgggtggaccgcaacgggcccagccgggaaatggtggccgag
accgccatcctgggcaactggctcttcgccctgttcctggccgattcgggagcccccgcc
ttgttccgcacccaggccaagccctcggagcccatcgaggagcgcgatcccagcgacgtg
taccaccacttcaagcagcgtcgcctgctcaaccgggtggagataaccgccaagccgggc
ctgcactccagcctgggggtgcacccctacacccacgccaccagccccatccgccgctat
ttggacctggtgatgcagcgccagatcggcagcatcctgtgcggcggcccgccgctgtac
agcgccaaagagttggaagagctggccatggaggtgggccccacggtgcgccgggccatg
cgggtgcgccaggtgcgccagcgctactggctcttgcagtggctgcgccagcgccaggac
cagccccaaacggcggtggtcatggagcgccagatgcgccgctggcaactgctgctcacc
gacatcatgatgctggtgaacatccccatccgcgccgggcaggagcttagccccggtcaa
gaggtgcaggtgatggtggagcgggtggacccctttgacgacatcctgcgggtgaagctg
gtctga
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