Desulfoferula mesophila: FAK_29520
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Entry
FAK_29520 CDS
T09861
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dmp
Desulfoferula mesophila
Pathway
dmp03410
Base excision repair
dmp03430
Mismatch repair
dmp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dmp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FAK_29520 (recJ)
03430 Mismatch repair
FAK_29520 (recJ)
03440 Homologous recombination
FAK_29520 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dmp03400
]
FAK_29520 (recJ)
DNA repair and recombination proteins [BR:
dmp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
FAK_29520 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
FAK_29520 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FAK_29520 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BEQ15886
UniProt:
A0AAU9EFI1
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All DBs
Position
3170708..3172426
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AA seq
572 aa
AA seq
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MVPSPPPLTWRVKEPTPEAAAALSRSLGLPPLAAQILCHRDLHDPEQARRFLCPGLEQLP
MPEEMLGLPQALEIIIPAIRSGAVIGVAGDYDADGVTATALLVEFLEACGASVVWDLPHR
VKDGYGFKPQRARRLAQAGAQVIVTADCGISDHEGVNEATRLGLPVVVTDHHLLPPGPLV
PAAAVVNPKQEACGMSVHLAGVGVAFYLAAGIRAALREAGWFKDRPEPNLRHSLDLVALG
TCADVVPLVEANRVLVAEGLKVMSQGLRPGLAALAKVAGRKGVLDTMDLGFYLAPRINAA
GRLDSPDPALELLLASEEGQALRRAQRLDRLNGDRREVESVIFEQALKCIGDDASLQEAA
CLVLGGEGWHQGVLGIVAGRLLERTGRPTMLFSVQNGTAVGSGRSREGFHLQRALAANAE
LLTHYGGHALAAGATMPSADLGRLAQALALEAARHLPPDTGQALDIDAQVSLGQLGPQML
EHIGRLAPFGQANPEPMLCAHGLEVDSCRVVGENHLKMELSQDGVRLPAIAFNCDEPWIE
NGSRLSAAFIPRISTFRGPHLEMVIKDLRPSA
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atggtaccttcacccccaccgctgacttggcgggtcaaagagcccacccccgaggccgcc
gcggcgctgtcccgttccctggggctgccgcccctggccgcccagatcttgtgccatcgc
gacctgcacgaccccgagcaggcccggcgcttcctttgcccgggcctggagcagcttccc
atgcccgaggagatgctggggcttccccaagccctggagataatcatcccggccatacgc
tccggcgcggtcatcggggtggccggggactacgacgccgacggcgtgaccgccaccgcc
ctgctggtggagtttctggaggcctgcggcgcttcggtagtgtgggatttgccgcacagg
gtcaaagacggctacggcttcaagccccagcgggcccggcgcctggcccaggccggggcc
caggtcatcgtgaccgccgattgtggtatcagcgatcacgagggggtgaacgaggccacc
cgcctgggcctgccggtggtggtcaccgaccatcacctgcttccgcccggccccctggtg
cccgccgcggcggtggtcaaccccaagcaggaggcctgcggcatgtcggtccacctggcc
ggggtgggcgtggccttttatctggccgccggcatccgggccgcccttcgcgaggcgggc
tggttcaaggaccggcccgagcccaacttgcgccacagcctggacctggtggccctgggc
acctgcgccgacgtggtgcccctggtggaagccaaccgggtcttggtggccgaggggctc
aaggtgatgagccagggtctgcgccccggcctggccgccctggccaaggtggccgggcgc
aaaggcgtgttggacaccatggatctgggtttctacctggccccgcgcataaacgccgcc
ggccgcctggacagcccggacccggccctggagctgctgctggcctcggaggaggggcag
gccctgcgccgcgcccagcgtctggaccgcctcaacggcgaccgccgggaggtggaatcg
gttatcttcgagcaagcgctaaaatgcatcggagacgatgcctccctgcaagaggcggcc
tgtctggtgctgggcggcgaaggctggcaccagggagtcctgggcatcgtggccggccgg
cttttggagcgcaccggacggccaaccatgctgttttccgtgcaaaacggtacggcggtg
ggttcgggccgctcgcgggagggctttcatctgcaacgggccctggccgccaacgccgag
ttgctcacccattacggcgggcacgccttggccgccggggccaccatgcccagcgccgac
ctggggcgcctggcccaggccctggccctggaagcggcccgccatttgccgccggacacc
ggccaggcgctggacatcgacgcccaggtgagcctgggccagctcggcccccagatgctg
gagcacatcgggcgcttggccccctttggccaggccaaccccgagcccatgctctgcgcc
catggcctggaggtggactcttgccgggtggtcggggaaaaccacctaaaaatggagctg
tcgcaagatggcgtgcgcctgcccgccatcgccttcaactgcgacgagccttggatcgaa
aacggctcccggctctcggcggccttcattccccgcatatccaccttccgggggccgcac
ctggaaatggtgatcaaggatctgcgcccctccgcctga
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