Deinococcus maricopensis: Deima_2898
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Entry
Deima_2898 CDS
T01412
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dmr
Deinococcus maricopensis
Brite
KEGG Orthology (KO) [BR:
dmr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dmr03016
]
Deima_2898
Enzymes [BR:
dmr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Deima_2898
Transfer RNA biogenesis [BR:
dmr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Deima_2898
Prokaryotic type
tRNA splicing ligases
Deima_2898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ADV68527
UniProt:
E8UBT8
LinkDB
All DBs
Position
complement(3073780..3075183)
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AA seq
467 aa
AA seq
DB search
MNGKHVTKLGFEKQAVGLALSAAHDREARGVSRSAILQELRDVQADPDAYLHDATYAPLA
SHLRAQAREAHARRGTALRTEPLPYDVWGAHLIDTAARMQMDTAMRLPISRAGALMPDAH
VGYGLPIGGVLATEDAVIPYGVGVDIGCSMMLSVLPIQHGAVKTDEAVSLLKRHTRFGAG
VGFERKAWRGHPVLDERTWQEQGLLRHLHGKASDQIGTSGSGNHFVEFGTFTLDQADLGL
EPGTYLAVLSHSGSRGFGAQVAGHYTRVAEQLHRHLEGPAKKLAWLPLDSDDGQGYWQAM
NLAGRYALANHDLIHARLSEALGVKPLAQISNSHNLAWKQHVNGQELIVHRKGATPAAAG
QLGLIPGSMADPGFVVRGKGHAAALESASHGAGRQLGRKAAQAQVPKRDVQAYLQDRGVT
LIGGGIDEAPQAYKRIEDVIREQRDLVDVVGRFDPKVVRMDTGNEDI
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcaagcacgtcaccaaactcgggttcgagaagcaggcggtcggcctcgcgctc
agcgccgcgcacgaccgtgaagcgcgcggtgtcagccgcagcgccatccttcaggaactc
cgcgacgtgcaggccgacccggacgcctacctgcacgacgccacctacgcccccctcgcc
tcgcacctccgtgcgcaggcccgcgaagcgcacgcccgccgcggcaccgcactgcgcacc
gagccgcttccgtacgacgtgtggggcgcgcatctgatcgacacggccgcgcgcatgcag
atggacaccgccatgcgcctccccatcagccgcgccggcgcgctgatgcccgacgcgcac
gtcgggtacggcctgcccatcggcggggtgctcgccaccgaagacgccgtcatcccgtac
ggcgtcggcgtggacatcggctgcagcatgatgctcagcgtcctgcccatccagcacggc
gccgtgaagaccgacgaggccgtcagcctgctcaaacgccacacccgcttcggcgccggc
gtcggctttgaacgcaaagcgtggcgcggccaccccgtccttgacgagcgcacctggcag
gaacagggtctgctccgccacctgcacggcaaagccagtgaccagatcggcaccagcggc
agcggcaaccacttcgtggagttcggcacgttcacgctcgaccaggcggacctgggcctc
gaaccgggcacgtacctcgccgtcctgtcgcacagcggctcgcgcggcttcggcgcgcag
gtcgccgggcactacacccgcgtggccgagcagctgcaccgtcacctcgaagggcccgcc
aagaaactcgcgtggctaccgctcgacagcgacgacggccaggggtactggcaggccatg
aacctcgccggtcgctacgccctcgcgaaccacgacctgattcacgcgcgcctcagcgaa
gccctcggcgtgaaacccctcgcgcagatcagcaacagccacaacctcgcctggaagcag
cacgtgaacggccaggaactcatcgtgcaccgcaagggtgctacgcccgccgccgccgga
cagctcggcctgattcccggcagcatggccgacccgggcttcgtcgtgcgcggtaagggt
cacgccgccgcgctcgaaagcgcttcgcacggcgcgggtcgacagctcggccgcaaagcc
gcgcaggcgcaggtcccgaagcgcgacgtgcaggcgtacctgcaggaccgtggcgtcacc
ctgatcggcggcggcatcgacgaagcgccccaggcgtacaaacgcattgaggacgtcatc
cgcgagcaacgtgacctcgtggacgtcgtgggccgcttcgacccgaaagtcgtgcgcatg
gacaccggcaacgaagacatctga
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