Deinococcus maricopensis: Deima_3296
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Entry
Deima_3296 CDS
T01412
Name
(GenBank) beta-lactamase domain protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dmr
Deinococcus maricopensis
Pathway
dmr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Deima_3296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmr03019
]
Deima_3296
Messenger RNA biogenesis [BR:
dmr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Deima_3296
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RNase_J_C
RMMBL
Anti-Pycsar_Apyc1
DUF5569
Motif
Other DBs
NCBI-ProteinID:
ADV68923
UniProt:
E8U4Q8
LinkDB
All DBs
Position
3491381..3493042
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AA seq
553 aa
AA seq
DB search
MTEHNAGGQPGHLEVIPLGGMGEIGKNILAYRYGDEILLVDAGLAFPDSHQVGVDLIIPR
IDYLQQHAGLIKGWVITHGHEDHIGSFPYILPRLPRIPIYSAKLTLGLLREKLSEFGIKD
SDVDLREIEPGERVQVGRAFTVDTFRITHSIPDNMGYVLHTPVGRVVHTGDFKLDAHPAD
GRTSDLSKVAQAGQDGTLLLISDSTNAERPGTTASESDVARNIEAIVKDARGRVFITTFA
SNVHRIQNIVTLAERNGRRVAMEGRSMLKYAQVAQAVGHLEFKDPLITAEEMADLQDSQA
LFVCTGSQGQPMSVLSRLAFGTHAKLALKRGDSVILSSNPIPGNEEAVNLVINRLYELGV
DVYYPPTYKVHASGHASQDELATILNLARPKFFLPWHGEPRHQINHAKFAQSLPHPPRRT
LIAKNGDIVKLTPDDFRVTGTVPAGGVYVDGLGVGDINDDIILERMGMSQEGVLLLTAVL
HPTPHVEVVSRGFVKTNRDLEAQIRRVALEAVETGLREKRRMEDVRDDLYGAVRRFVRKT
TGRNPVLIPTIVE
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagcacaacgcaggcggccagccgggccacctggaagtcatcccgttgggcggg
atgggcgagatcggcaagaacattctcgcgtaccggtacggcgacgagatcctgctggtc
gacgcgggcctcgccttccccgacagtcaccaggtgggcgtggacctgatcatcccgcgc
atcgactacctgcagcagcacgcgggcctcatcaagggctgggtgatcacgcacgggcac
gaggaccacatcggctccttcccgtacatcctgccgcgcctgccgcgcattccgatttac
agcgcgaaactcacgctgggcctgctgcgcgagaagctcagcgagttcggcatcaaggac
agcgacgtggacctgcgcgaaatcgaacctggtgagcgcgttcaggtcggccgggccttc
acggtggacaccttccgcatcacgcacagcatcccggacaacatgggctacgtgctgcac
acgccggtgggccgcgtcgtgcacaccggcgacttcaagctcgacgcgcaccctgccgac
ggacgcaccagcgacctcagcaaggtcgcgcaggccgggcaggacggcacgctgctgctc
atcagcgacagcaccaacgcggaacgtcccggcacgaccgccagcgagtccgacgtggcc
cgcaacatcgaggcgatcgtgaaggacgcgcgcggccgcgtgttcatcacgacgttcgcg
tcgaacgtgcaccgcatccagaacatcgtgacgctcgcggaacgcaacggccgccgcgtc
gccatggaaggccgcagcatgctgaagtacgcgcaggtcgcgcaggcggtcgggcacctc
gagttcaaggacccgctcatcaccgccgaggagatggcggacctgcaggacagccaagcg
ctgttcgtctgcaccggctcgcagggtcagccgatgagcgtgctgtctcgcctcgcgttc
ggtacgcacgcgaaactcgccctgaaacgcggcgacagcgtgatcctcagcagcaacccc
attcccgggaacgaggaggccgtgaacctcgtgatcaaccgcctgtacgagctgggcgtg
gacgtgtactacccgcccacgtacaaggtgcacgcgtccgggcacgccagtcaggacgag
ctggcgaccatcctgaacctcgcgcggccgaagttcttcctgccgtggcacggcgagccg
cgccaccagatcaaccacgcgaaattcgcgcagtcgctgccgcacccgccgcgccgcacc
ctgatcgccaagaacggcgacatcgtgaagctcaccccggacgacttccgcgtgaccggc
acggtcccggcgggcggcgtgtacgtggacggcctgggcgtcggcgacatcaacgacgac
atcatcctggaacgcatgggcatgagccaggagggcgtcctgctgctcacggcggtgctg
caccccacgccgcacgtggaggtcgtgtcgcgcggcttcgtgaagaccaaccgggacctc
gaggcgcagatccgccgcgtggcgctcgaagcggtcgagacgggcctgcgcgagaagcgc
cgcatggaggacgtccgcgacgacctgtacggcgccgtgcgccgcttcgtgcgcaagacg
acgggccgcaaccccgtcctgattcccaccatcgtcgagtga
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