Oceanidesulfovibrio marinus: E8L03_04365
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Entry
E8L03_04365 CDS
T06743
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
dms
Oceanidesulfovibrio marinus
Pathway
dms02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dms00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
E8L03_04365 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dms03021
]
E8L03_04365 (rpoD)
Transcription machinery [BR:
dms03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
E8L03_04365 (rpoD)
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
QJT08204
UniProt:
A0A6P1ZME2
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Position
complement(985657..987426)
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AA seq
589 aa
AA seq
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MANNLREIQQIKTLITKGKEHGFLTFDEVSKALPSEINTPEQIEEIMGIFEQMDIAIVDS
EKDGKKLGLTRDSDDDGGSNELDLTEDDDAVDYSSRSTDPVRMYLREMGAVPLLDREGEV
HIAKKIENGELEVLYALVEVPVAIEELIAVGEDLKNNRIKLKDVVKTIEEDDPSEDEMNQ
RSRVIFLLDEIKTFYKKKKKIYLKLDDCARLDRRVYGVQKEVLTFKEEVVTRLRDIKLEK
TLIDRIIETVDDYVRQMHNCQRDLSAYILSVGKTQAEIRELFKALDEREINPVAAADEMG
MTVEEIFSFKEMISGKMEILTRLQDKCCHNVHDLEEVLWRIRRGSLAASRAKQELIRSNL
RLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIA
DQARTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIAERMDYPLEKVKKVLKIAKEP
ISLETPIGDEEDSSLGDFIEDKKAVAPAEEVVNTKLGEQIASVLADLTPREEQVLRKRFG
IGEKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPVRSQTLRSYYES
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggccaataatctgagggagatccaacagatcaaaaccttgatcaccaagggtaaggag
cacggcttcctcacctttgatgaggtgagcaaggctttgccttcggagatcaacacccct
gagcagatcgaagagatcatggggattttcgagcagatggacatcgccatcgtggactcg
gaaaaggacggcaagaagctggggctcacgcgcgacagcgacgatgacggcggctccaac
gagctggacctgaccgaggacgatgatgccgtagactactcgtcgcgctcgaccgatccg
gtgcggatgtatctgcgtgagatgggcgcggtgccgctgctggatcgcgagggcgaggtc
cacattgccaagaagatcgagaatggcgagctggaggttctgtacgccctggtggaggtt
ccggtcgccatcgaagaactcatcgctgtgggcgaggacctcaagaacaaccgaatcaag
cttaaagacgtggtcaagaccatcgaggaggacgaccccagcgaggacgagatgaaccag
cgttcccgcgtcatcttcctgcttgacgagatcaagaccttctacaagaaaaagaagaag
atatacctcaagctggatgactgcgcccggctggaccgccgcgtgtacggcgtgcagaag
gaagtcctcaccttcaaggaagaggtggttacccggctgcgcgacatcaagttggaaaag
acgctcatcgaccgcatcatcgagacggtggatgactacgtgcgccagatgcacaactgc
cagcgcgacctgtccgcgtatatcctctccgtgggcaagacccaggccgagatccgcgag
ctgttcaaggccctggacgagcgcgagataaaccccgtggccgcggccgacgagatgggc
atgaccgtggaagagatcttctccttcaaggaaatgatctccggcaagatggagattctg
acgcgtctgcaggacaagtgctgccataacgtgcacgacctggaagaggtgctgtggcgc
atccgccgcggctccctggcggcgtcccgcgccaagcaggagctcatccgctccaacctc
cggctcgtggtctccattgccaagaagtacacgaaccgtggcctgcagtttctggatctg
atccaggagggcaatatcggcctgatgaaggccgtggacaagttcgagtatcagcgcggc
tacaagttctccacctacgccacgtggtggattcgccaggccatcacccgcgctatcgcc
gaccaggcgcgcaccatccgcattccggtgcacatgatagagaccatcaacaagctcatc
cgcacctcgcgctatctggtgcaggagctgggccgcgatccaacgccggaggagatcgcc
gagcgcatggactacccgctggagaaggtcaagaaggtcctcaagatcgctaaggagccg
atctccctggaaacgcccatcggcgacgaggaagactccagcctgggcgattttatcgag
gacaagaaggccgtggctccggccgaggaagtggtcaacaccaagctgggcgagcagatt
gccagcgtgctggccgacctgaccccccgcgaggagcaggtgctgcgcaagcgcttcggc
atcggcgaaaagagcgaccacaccctggaagaggtgggcaagctcttcaacgtcacccgc
gagcgtattcggcagatcgaggccaaggcgcttcgcaagctgcgccatccggtccgtagc
cagaccttgcgttcctattacgaaagctga
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