Oceanidesulfovibrio marinus: E8L03_13600
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Entry
E8L03_13600 CDS
T06743
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dms
Oceanidesulfovibrio marinus
Brite
KEGG Orthology (KO) [BR:
dms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dms03016
]
E8L03_13600
Enzymes [BR:
dms01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
E8L03_13600
Transfer RNA biogenesis [BR:
dms03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
E8L03_13600
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
QJT09906
LinkDB
All DBs
Position
complement(3099528..3101669)
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AA seq
713 aa
AA seq
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MSGSTVRHPVPGCVVEFMQSNRPQIAFVAGEKSGRLKLLTLNSREMNHKPERLLPWFGPQ
YDPNLSRQEVLDLLAKHEERRSAIESEVDAMELWDFAQGEVATAGVDWFAGLIWDGDDTR
DVDHLAALGRALLGCKTHFKLNPPVFAIHPEEKVETRLREQKIAEEREKLAAAGRSFFKQ
LWDARQRTGTVPVKDAGAWAAELGDDLSARLADLLCTRMARPEDQESEQVWRVVSKGLPE
VPHLPLLLAQAWGVLPAHYNFHLDQNDYTSGDGWWTELEPEVRELQTLMAQEAAAAELRT
DGLLGRLVSVDAATTKDLDDAFAVEPLENGEGWRVTIALACPAMYWPWGGELDHAVAYRA
SSLYLPEGASHMMPEVLGTEVFSLCEQSPRPALLVTCEINREGRLISCTPDAGWVRIAAN
LTYDQAEEAIASEQDDHGANLAAGYELAEALRDGRIACGAALIMRQEPEVELEGEAADTR
VRLVYKPETPRSQLLVSELMILVNRAVGSWAAERSIPLYYRTQNIALPKESAGVWEAPYE
VYRVVRALGPSCLETRPARHATLGAEAYSPVSSPLRRYADLINEGQILYALKHDAPRLDV
GAMESMLTSLVARMEAVGRIQRFRPRYWKLLAVKQSKNPTYDAQIVDEAPSFVTAAVPDL
QIFVRGPKKMFGDKIVPGQHFSVRLGKVDPLANEIHVLEAWESEGQDTNGRDE
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaggttccactgtgcgccacccggtaccgggctgcgtagtcgagttcatgcagtcc
aaccggccgcagattgcctttgtggcgggcgaaaaaagcggacgtctcaagctgctcacc
ctgaacagccgggagatgaatcataagcctgaacggctcctgccgtggttcggaccgcag
tacgacccgaacctctcgcgccaggaggtgctcgacctgctggcaaagcatgaggagcgg
cgcagcgccatcgagtccgaggtagacgccatggagctctgggactttgcccagggcgag
gtggccaccgccggggtggactggtttgccggcctgatctgggacggcgacgacaccagg
gacgtggaccatctggccgcgctgggccgggcgctgctgggctgcaagacgcatttcaag
ctcaatccgccggtcttcgccatccacccggaagaaaaggtggaaacgaggctgcgcgag
cagaagatagccgaagagcgcgagaagctggccgcggccggacgttcattcttcaagcag
ctctgggatgcgcgccagcgcaccggcaccgtgccggtcaaggacgccggagcgtgggcc
gccgagctgggggacgatctgtcggcccggctcgcggatcttctgtgtacgcgtatggcc
cggcccgaggaccaggagagcgagcaggtctggcgagtggtcagcaagggcctgcccgag
gtgccgcacctgccgttgctgctggcccaggcctggggcgtgctgccggcgcattacaac
ttccatctggaccagaacgattatacatccggcgacggctggtggacggagcttgagccc
gaggtgcgtgagctgcagaccttgatggcgcaggaagccgccgcagccgagctgcgcacg
gacgggctgcttggccgcctggtgagtgtggacgcagccaccaccaaggacctggacgac
gcctttgccgtggagcccctggagaacggcgagggctggcgcgtaaccatcgcccttgcc
tgcccggcaatgtactggccctggggcggggagctggaccacgccgtggcctaccgcgcc
tccagcctctatctgccggaaggcgccagccacatgatgcccgaggtgctgggcaccgag
gtcttcagcctttgcgagcagtccccgcggccggccctgctggtgacgtgcgagatcaac
cgcgagggccgtctgatctcctgcacgccggacgccggctgggtgcgcatcgccgcgaac
ctgacctacgaccaggccgaggaggccatcgccagcgaacaggacgatcacggtgcgaac
ctcgccgccgggtacgagctggccgaggcgctccgtgacggccgcatcgcctgcggcgcg
gcgctcatcatgcgccaggagcccgaggtagagctggaaggcgaggccgcggacacccgc
gtgcgcctggtgtacaagccggagacgccgcggtcgcagctgctggtcagcgagctgatg
attctggtgaaccgcgccgtgggctcctgggccgcggagcgctccatccccctgtactac
cgcacgcagaacatcgccctgcccaaggagagcgccggcgtgtgggaagcgccgtacgag
gtctaccgcgtggtgcgcgccctcggcccctcctgtctggagacgcggccggctcgccac
gccaccctgggagccgaggcgtacagcccggtgagctcgccgctccggcgctatgcggac
ctgatcaacgaaggccagattctgtacgctttgaagcacgacgcgccgcgcttggatgtc
ggcgcaatggagtccatgctcacctccctggttgcgcgcatggaggccgtgggccgcatc
cagcggttccggccgcgctactggaagctcctggccgtgaagcagtccaagaaccccacg
tacgatgcacagatcgtggacgaggccccgagctttgtcacggcggccgtgccggacttg
caaattttcgtgcgcgggcccaagaagatgtttggggacaagatagtacccgggcagcat
ttctccgtgcgcctgggcaaggtggaccccctggccaacgagatccacgtgctggaagcg
tgggagagtgagggccaggacaccaacgggagggatgaatga
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