Desulfitobacterium metallireducens: DESME_01415
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Entry
DESME_01415 CDS
T03599
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dmt
Desulfitobacterium metallireducens
Pathway
dmt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dmt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DESME_01415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dmt03021
]
DESME_01415
03400 DNA repair and recombination proteins [BR:
dmt03400
]
DESME_01415
Enzymes [BR:
dmt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DESME_01415
Transcription machinery [BR:
dmt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DESME_01415
DNA repair and recombination proteins [BR:
dmt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DESME_01415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AHF05889
UniProt:
W0E9I5
LinkDB
All DBs
Position
293589..297026
Genome browser
AA seq
1145 aa
AA seq
DB search
MLDSNNIDRMRIGLASPEMIRAWSHGEVKKPETINYRTLKPEREGLFCEKIFGPTRDWEC
HCGKYKRVRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRSLEKVLYFVSYIVTDAGDTSLIKKQLLTETEYREYRDKYGNRFQAAMGAEAIKVLLE
EMDLDKLYDELRTELKEVSGQRKIRAIRRLEVVEALKISGNRPEWMIMDVVPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLRMHQCGLPKE
MAIELFKPFVMKKLVNEGYAHNIKSAKRMVERVRPEVWDVLEEVITEHPVLLNRAPTLHR
LGIQAFEPILVEGRALQIHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARILMLSSHNIL
NPKDGRPVASPTQDMVLGSYYLTMDRPGAQGEGKIFKDMDEAVLAYDAKELNLQAEIKVR
QEDGTLLETTVGRLIFNSVIPPEVGYINEVQGKKQLNNIVAKSYRLCGYQATADLLDGIK
SLGFKYSTKAGMTVGLADITVPKEKRELLAAADDRVAKTEQQYRRGLITDEERYGKVIEI
WTKATDDVTQALMNTLDHFNPIYMMATSGARGNIQQLRQLAGMRGLMADPSGRTIELPIK
ANFREGLTVLEYFISSHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREDDCGTTQGI
LVEDIKDGPEVIEKLEERLVGRFVLEDVKDPKTGEILATTENEITEEQAKAIAGVYDQLK
IRSVLTCKSRHGVCKRCYGRNLATGRPVEMGEAVGIIAAQSIGEPGTQLTMRTFHTGGVA
GDDITQGLPRVEELFEARKPKGQAIISEVDGTVTVREVKGRREVEIVTESDEHVNYTIPY
GSRLKVRDGVRVEAGDELTEGSVNPHDMLKVKGIRGVQVYLVGEVQRVYRLQGVDINDKH
IEVMVRQMLRKVKIEEAGDTNLLPGALIDVFEFEEENAKAIASGGEPAVARPVLLGITKA
SLATDSFLSAASFQETTRVLTDAAIKGKVDPLLGLKENVIIGKLIPAGTGMSRYRNVKII
DSEEV
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
ttgttagactccaataacattgatcggatgcgtattggcctggcttctccggaaatgatc
cgtgcctggtcgcatggagaagtaaagaagccagaaaccattaactatcgtactttaaaa
ccagaacgagaaggccttttttgcgaaaagatctttggaccaacacgtgactgggaatgc
cactgtggtaaatataagcgggtgcggtataagggaatcgtttgtgaccgttgcggtgtt
gaagttacacgttcgaaggtacgccgcgagcggatgggacatattgagttagctgctccg
gtatctcatatttggtatttcaaaggaattccaagccgaatgggacttcttctcgacatg
tcgccccgttccttggaaaaggtcctttatttcgtatcctacatcgtaaccgatgcgggg
gatacttcattgatcaagaaacaacttctcactgaaacggaataccgagaatatcgagat
aagtacggtaatcgtttccaagcagcaatgggtgctgaagccattaaagttcttcttgaa
gaaatggacttagataaactttatgacgagttacgcactgagctgaaagaggtttctgga
caacgtaaaatccgggctattcggcgtttagaagtggttgaagccctcaagatttcggga
aaccgtcctgagtggatgattatggatgttgtcccggttattccaccagaactccgtcct
atggttcagcttgacggtggacgttttgcgacttctgacttaaacgacctctatcgtcgt
gttattaaccggaataatcggttgaagcgtctcttagatttaggtgcacctgatatcatt
gttcgcaacgaaaagcggatgctccaagaagccgttgatgctttgattgataatggtcgt
cgtggacgtcctgtaaccggaccgggtaaccgtccgttgaaatctttgagtgacatgctt
aaaggtaagcaaggccgtttccgtcaaaacttgctcggaaaacgggttgattactccgga
cgttccgtaatcgtagttggaccaaatcttagaatgcatcagtgcggtctgcctaaagaa
atggcaatcgaactttttaaaccctttgtcatgaaaaaacttgttaatgaagggtatgct
cataatattaaaagtgctaaacgcatggttgaacgcgttcgcccagaagtttgggacgtt
ctcgaagaagtaattacagaacaccctgttcttttgaaccgtgcaccaacattgcaccgc
cttgggattcaagctttcgagcctatccttgttgaaggacgtgccttgcaaattcatcct
ttggtatgtacagcttataacgctgactttgatggagaccaaatggcagtccatgtgcct
ctttcatcagaggcgcaagcagaagctcgaattctgatgttatcttcgcataatattttg
aaccccaaagatggtcgtcctgttgcctccccaactcaggatatggtccttggttcatat
tacctaactatggatcgcccgggtgcccaaggggaaggaaagatcttcaaagacatggat
gaggctgtattggcctatgacgcgaaggaacttaaccttcaagccgagattaaggtccgg
caagaagatggaacgcttctggagacgacggttggccgtttgatttttaactctgtgatt
ccaccagaagtaggttatatcaatgaagtccagggcaaaaaacaactgaacaatattgta
gcgaagtcctaccgcttatgtgggtatcaggctacggctgatctactcgatggaattaag
agtttaggttttaaatactcgacaaaggccggtatgacagtaggtttggctgacattacc
gttccaaaagagaagagagagcttttagctgcggccgatgatcgagttgcgaaaacggaa
caacaataccgtcgtggtctcatcaccgatgaagagcgctatggtaaggtcattgagatc
tggaccaaagctactgacgatgttacacaagcgctgatgaatacgctcgatcatttcaat
ccaatttacatgatggcaacctctggggcacgtggtaatattcaacagttacgtcagttg
gccggtatgcgtggactcatggctgatccgtcaggacgaacgattgagttgcctattaag
gcgaatttccgtgaaggacttaccgttttagagtacttcatttcctcccatggtgctcgg
aaaggtttggctgatacagctctgcggaccgcagactctggatacctcactcgtcgattg
gttgatgtctcccaggatgttattgtccgtgaggacgactgcggtacgacccaaggaatt
cttgtggaagatatcaaagatggcccagaagtcattgaaaaacttgaggaacgtcttgta
gggcgctttgtcctcgaggatgttaaagatccaaagaccggtgaaattttagcaacaacg
gaaaatgaaatcactgaagagcaggcaaaggcaattgctggagtctacgatcaactcaaa
atccgttcggtgctaacctgtaagagtcgccacggtgtctgcaagaggtgctatggacgg
aacctcgcgacgggtcgccctgttgaaatgggtgaagcagtcggtattattgcagcacag
tcaattggtgagcctggaactcagcttaccatgcggacattccacacaggtggtgttgct
ggagacgatatcacgcaaggtttaccacgggtcgaggagctatttgaagcccgtaaacca
aagggtcaagcgatcatttcagaagtcgatggaacagttaccgtgcgagaagttaaggga
cgtcgtgaagtcgaaatcgtgactgagagtgatgagcatgtcaactatacaattccatat
ggctctcgcctgaaagttagagatggtgttcgggttgaagcgggagacgagcttactgaa
ggaagcgttaacccccatgacatgttaaaggtcaaagggatacgcggagtccaggtctat
ctcgtcggtgaagtacaacgggtttatcgccttcaaggtgttgatatcaatgataaacac
attgaagtcatggttcgccagatgcttcgcaaggtgaagatcgaggaagctggagatacc
aatctcttgccaggtgccttgattgatgtctttgaatttgaggaagagaatgcgaaggct
atagcctcaggtggtgagcctgcagttgcccgtcctgttcttcttggaatcacgaaagct
tcactcgctacagattccttcctttccgcagcttccttccaggaaacgacacgtgtctta
accgatgctgcgatcaaaggaaaagttgatccattgttaggattgaaggagaacgtgatc
attggtaagttgattcctgctggaacaggaatgtcacgttatcgcaatgtcaaaattatc
gattcggaagaagtttga
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integrated database retrieval system
