Desulfitobacterium metallireducens: DESME_05970
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Entry
DESME_05970 CDS
T03599
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
dmt
Desulfitobacterium metallireducens
Pathway
dmt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DESME_05970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmt03019
]
DESME_05970
Messenger RNA biogenesis [BR:
dmt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DESME_05970
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
SH3_13
Motif
Other DBs
NCBI-ProteinID:
AHF06651
UniProt:
W0EC71
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All DBs
Position
1181255..1182802
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AA seq
515 aa
AA seq
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MEVTIIVSGVLVILALGIGGFVGWIIRKNASEKVIGSAEEEAKRILDNAQTAAEAKKRES
VVAAKEEVMQIRNDAEKEVRERRSEVQRLERRVTQKEETLDRKMETLERKEENLHRKEEE
TEKLRENLTATVAKQKEELERVSGLSTEEAKQILLHSVEVEVQYESAIMIKEIETRAKEE
AEKRAKNIISLAIQRCAADHVAETTVSVVALPSDEMKGRIIGREGRNIRTLETLTGIDLI
IDDTPEAVILSGFDPIRREVARIALEKLIADGRIHPARIEEMVEKAQKEVEQKIREEGEQ
ATFDTGVHGLHPEIIKLLGRLKFRTSYGQNVLKHSIEVSHLAGLMAAELGVDVQLAKRAG
LLHDIGKAVDHDTEGTHVQIGVDLAKKYKESTEVIHAIEAHHGDVEAKTIVAVLVSAADA
VSAARPGARRETLESYIKRLQKLEEIADTFEGVEKSYAIQAGREIRIIVKPDKVDDILAP
RVAHEISKRIEDELEYPGQIKVVVIRETRAVDFAK
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
ttggaggttactattatagtatctggagtgctggtcattttagcacttggcataggtggc
tttgtagggtggatcattcgcaaaaatgcgtctgaaaaagtaatcggttctgctgaagaa
gaagcaaaacgtatcctggataacgcccaaacagcggctgaagcaaagaaacgtgagtca
gttgtcgctgctaaagaagaggtcatgcaaattcgtaatgatgctgaaaaagaagttcgt
gaaaggcgttcagaggttcaacgtttagaacgaagggttacgcaaaaagaagagactctt
gatcgtaaaatggagactcttgaacgaaaggaagaaaacttacatcgtaaagaggaagaa
actgaaaaacttcgcgaaaatttaactgcaaccgtagcgaagcaaaaggaagaattagaa
cgtgtttctggtctttcaacagaagaagcgaagcaaatcctcttacacagtgtagaagta
gaagtccagtatgaatccgcaattatgattaaagagattgaaactcgggctaaagaagaa
gcggaaaaacgggcaaagaatattatctcgttagctattcaacgttgtgcggcagatcat
gttgccgaaactacggtttcagttgtagcgctaccgagtgatgagatgaaagggagaatt
atcgggcgtgagggtcgtaatatacggactcttgagaccttgaccggtattgatctgatc
attgatgatacgccggaggccgtaattctttcgggatttgatcctattcgtcgagaagtt
gcacgtatcgctttagaaaaactgattgcagatggtcggatccatcctgcacgtattgaa
gaaatggttgaaaaggcccaaaaagaagtggaacagaaaatccgtgaagagggagaacaa
gcgacctttgatacaggcgtgcatggtctccatcctgagattataaaacttttaggccga
ttgaaattcagaacgagttatggtcaaaatgtcctcaagcattccatcgaagtttctcat
ctagcaggtttgatggcggcagaacttggcgtcgatgtccaactcgctaagcgcgctgga
ttattgcatgacattgggaaagctgtcgaccatgatactgaaggaacgcatgttcaaatt
ggtgtagaccttgcgaagaagtataaagaatctactgaggttattcatgcaattgaagcc
catcatggtgatgttgaagctaagacaatagtagcggttttggtatctgcagcagatgcc
gtatcggctgcacgacctggagctcgtcgtgaaacattggagtcttacatcaaacgtttg
cagaaattagaagagattgcggatacttttgaaggagtcgaaaaatcgtatgctatccag
gctggccgagaaattagaattattgtaaagccggataaagttgatgacattttagctcca
cgcgtagctcatgaaattagcaaacgaatcgaagatgaactcgaatatcctggacagatt
aaagtggtagttattcgggagacacgtgctgttgattttgcaaaataa
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