Desulfitobacterium metallireducens: DESME_11170
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Entry
DESME_11170 CDS
T03599
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dmt
Desulfitobacterium metallireducens
Pathway
dmt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DESME_11170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmt03019
]
DESME_11170
Messenger RNA biogenesis [BR:
dmt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DESME_11170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF2187
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AHF07497
UniProt:
W0E9Q4
LinkDB
All DBs
Position
complement(2182742..2184406)
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AA seq
554 aa
AA seq
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MPKEHKVQIIPLGGLGEIGKNMTVIRYDNQMVLIDAGLAFPDEEMLGIDVVIPDYSYLIE
HKEMLQGILVTHGHEDHIGALPYLLKDLDVPIFATRLTLGLIQSKLKESNLNHVQATVVQ
PRDMIKLGVFRIEFIRVSHSIPDAVGIAIHTPLGTIVHTGDFKLDHTPVSGDILDIHKFS
ELGDKGVLCLMSDSTNVERTGITMSERNVGHTFEEAFKDANERIIIASFASNVHRIQQAI
TAAYKTNRKVAVVGRSMVNVVAIASELGYLDIPEGTLIDVDEIVNLPGNQACILTTGSQG
EPMAALSRMAMSDHRSVSIQPGDTVIISASPIPGNEKSVARTVDRLFKLGANVIYGSING
VHVSGHASQEDLKLMLNMVRPQYFIPVHGEYRMLVKHMQLAEQLGMERDNIFLAENGSII
EFTRHGASMTGKVTAGKVLIDGLGVGDVGNIVLRDRKQLSQDGILIVVMTISRSTRAIVA
GPDIVTRGFVYVRESETMLDEAKEKVRQTMARLKDNHVTEWAVLKGQVRDALSKHFYEKT
RRRPMILPIIQEVE
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaagaacacaaggtgcagattatacccttgggtggcttgggtgagatcggtaaa
aatatgacggtaattcgctatgataatcaaatggtcttgattgatgcgggactagcattc
cctgatgaagaaatgttagggattgatgttgtcatacctgattattcttacttgattgag
cataaagagatgctccagggtatattagtgacgcatggacatgaagatcatatcggagct
ttaccctatcttctcaaagatttagatgttccgatttttgcaacacggctgactttagga
cttattcagtcgaagcttaaagaaagcaatctaaatcatgtccaagctactgtagtccaa
ccccgtgatatgattaagttaggagtgtttcggatagaatttatccgggtgagccacagc
atacctgatgcggtggggatagcaattcacactccactgggtacaattgttcataccgga
gattttaaacttgatcatactccagtgtctggtgatattttggatattcataagttttct
gagctgggtgataaaggggtactctgcttaatgtccgacagtactaatgtcgaacgcact
ggaattacgatgtcggaacggaacgttggacatacttttgaagaagcattcaaagatgct
aatgagcgtattatcatcgctagctttgcatcaaatgtacatcggattcagcaagctatt
acagcagcctacaaaaccaatcgcaaagttgctgttgttggacggagtatggttaatgtc
gtagcaattgcctcagagttgggataccttgatattcctgaaggaactttaatagatgtc
gatgagatcgtaaatctgccgggtaaccaagcatgtatattgacgacaggaagtcaggga
gaaccaatggcagctttatcacggatggccatgagtgaccaccgtagtgtctcaattcaa
cccggagatactgtaattatttcggccagtcccattcctggaaatgaaaaatctgtagct
cgaactgttgatcgtttatttaagctgggtgcaaatgtgatttatggttcaattaatgga
gttcatgtgtcggggcatgctagtcaagaagatcttaagttgatgttgaacatggttcgt
ccgcaatatttcattcctgtccacggggaataccggatgttggttaagcatatgcagctt
gcggagcagctaggaatggaaagagataatatctttttagccgagaatgggagtattatc
gagtttacacggcatggcgcaagtatgacaggaaaagttacggcagggaaagttctaatt
gatggtttaggtgtcggagatgtcggaaatatagtccttagggatcgtaaacaactttcc
caagatggaattcttattgttgtcatgacgattagccgttctacgagagccattgtagcc
ggaccagatatcgtaactcgagggttcgtttatgttcgtgaatcagaaactatgcttgat
gaggccaaagaaaaagttcgtcagacgatggctcgtttgaaggacaatcacgtgaccgaa
tgggctgtattaaaaggacaggtaagggatgcgctgagtaaacacttttacgaaaaaacc
cgtcgtcgtcccatgattttacctattattcaagaagtggaatag
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