Desulfurococcus mucosus: Desmu_0039
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Entry
Desmu_0039 CDS
T01406
Name
(GenBank) RNA-binding protein (consists of S1 domain and a Zn-ribbon domain)
KO
K07573
exosome complex component CSL4
Organism
dmu
Desulfurococcus mucosus
Pathway
dmu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desmu_0039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmu03019
]
Desmu_0039
Messenger RNA biogenesis [BR:
dmu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Desmu_0039
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Desmu_0039
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
S1
Prok-RING_1
EXOSC1
FtrD-like
Zn_ribbon_RPB9
GerPE
Motif
Other DBs
NCBI-ProteinID:
ADV64358
UniProt:
E8RAE8
LinkDB
All DBs
Position
37708..38259
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AA seq
183 aa
AA seq
DB search
MNAQDVVVPGEPLAVEEEAIPVQGAYLDSRGFIRSLVFGLKVFDKYRKQVYVKQVKTTGF
VKPGSVVEAYVEAVSDDIAFLRIYSVEGQGMSASGVLHVSQASNGFVQSLLDVVRPGDYV
KAKVLNNSIPYQLTLKEPDLGVVEAYCSVCGGLLYRSGDVLVCSLCGNREKRKTSLSYIH
VSR
NT seq
552 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctcaagacgtagtagtgcccggggaaccccttgccgttgaagaggaagccatc
ccggttcaaggcgcttacctggattcaaggggcttcattagatccctggtcttcgggctc
aaggtcttcgacaagtataggaagcaggtttacgtgaaacaggtgaagaccacgggcttc
gttaagcctggctcagttgtcgaagcatatgtggaagcagtgtcggatgacatagctttc
ctgagaatatacagcgtggaaggacagggtatgagtgcttcaggagtgctccatgtatcc
caggcatccaatggcttcgtgcagagcctcctcgacgttgtcagacccggcgactacgtg
aaggccaaggtcctcaataactcgataccctaccagctgacgctgaaggagcccgaccta
ggtgttgtggaagcatactgcagtgtttgcggcggactactatacaggagcggcgatgta
ctcgtgtgcagcctctgcgggaaccgtgagaagaggaagactagtctgagctacatacat
gtgtcaaggtga
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