Dehalococcoides mccartyi CG1: X792_04390
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Entry
X792_04390 CDS
T03647
Name
(GenBank) recombination protein RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dmx
Dehalococcoides mccartyi CG1
Pathway
dmx03410
Base excision repair
dmx03430
Mismatch repair
dmx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dmx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
X792_04390
03430 Mismatch repair
X792_04390
03440 Homologous recombination
X792_04390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dmx03400
]
X792_04390
DNA repair and recombination proteins [BR:
dmx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
X792_04390
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
X792_04390
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
X792_04390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AII58009
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Position
808519..810219
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AA seq
566 aa
AA seq
DB search
MKILANCLWKLKPAPPEKTSQNFPYPPLISRLLHNRGIETVEEAELFLSSDRRLNHNPFL
FPDMEKAVSRIYKALLTGEKIVVYGDFDADGLTATAVLTTGIARLGGNVIPYIPHRVTEG
YGLKISALEKHRTEGVSLIISTDCGITAIPEIKRANKIGLDVIVTDHHTPLDELPPAYAI
INPKVPGETYPFKELAGVGVAYKLIQALYRNLGREDETRDLLDLVAIGTIADIVPILNEN
RYLVKEGIKFLNAEPRPGIIEMAQLSRLHLGEIEPESISWIMAPRLNAAGRLEHALAGYK
LLTATTISDSQELALWLENKNTERQQLTVHFVEKARARLDTQFLPALLIFIDAECPQGIS
GLVAGRLSDEYYRPSIVIKTNADSATGSCRSIPDFNIIQALSRFAHLFSHFGGHAQAAGF
TLPIENLDAFVQGISAYAEETLSGVELKPFIDIDIDTDLSELCPATLRELERLAPFGEAN
PKPVFLSRGLNITDYRSMGSNNEHLKLRIKHKGRFWDGVAFRQAKELNGFLQSPVDIVYN
LEQDKWCGTDTLRLKIIDMSPAGTKI
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaatattggctaattgcctctggaaactaaaaccggcacctccggaaaagactagc
cagaattttccttatccgcccttgattagccgtttgcttcataacaggggtattgaaacc
gttgaagaagctgagttattcctgtcatcagacaggcgtctaaatcataacccattctta
tttcctgatatggaaaaagcggtcagccgtatctacaaagccttgctgacaggtgaaaaa
atagtagtatacggggattttgatgctgacgggctgacggctacagcagttttaaccacc
ggcattgcccgtttgggagggaatgtaatcccttacattcctcaccgcgttactgaaggg
tatggtttaaaaatatccgcccttgaaaaacaccgaacagagggtgtttcacttatcatc
agcacagactgtggcatcaccgctatacctgaaataaagcgggcaaataaaatcgggctg
gatgtgatagtcacagaccaccataccccgctagatgaactgccgcctgcatatgccatt
ataaaccccaaagtacccggcgaaacctacccttttaaggaactggcaggagttggggta
gcgtacaaacttatacaggctttataccgcaacttggggcgggaagatgaaaccagagat
ttactggacttggtagctataggcacaattgctgatatagtacccattctgaatgaaaac
cgttatctggtaaaagagggcatcaaattcctcaatgccgaacctcgtcccggcattatt
gaaatggcacagcttagccgtctgcatctaggggaaatagaaccggagagcatttcgtgg
ataatggcaccccgcctgaacgcagccggaaggctggaacatgctctggcaggatataaa
ctgcttaccgccaccaccataagtgattctcaagaactggcactctggcttgaaaacaaa
aacaccgaacgccagcagctgaccgttcattttgtagaaaaagccagagctaggctggat
acacagtttctgcctgcattacttatattcattgatgccgaatgtccgcaaggtatcagc
gggcttgtggcaggcagactgtccgatgaatattaccgtccgtctattgttataaagacc
aacgcagattcggctacaggcagttgccgcagcataccggatttcaatatcattcaggcc
ctcagccgctttgcacatctgttcagccacttcggcgggcatgcccaggcagccggtttc
accctgcccatagaaaatttggatgcatttgtccaaggcatatccgcttatgccgaagaa
accctaagcggtgtagaactgaagccgtttatagatatagatatagacacagatctaagt
gaactctgcccggccaccctgcgtgaacttgagaggctggctccattcggagaggcaaac
ccgaaacctgtgttcctaagccgggggctgaatattactgattaccgctccatgggcagc
aacaacgaacacctgaaattgcgtattaaacataaaggccgcttctgggatggagtggcc
tttcgccaggcaaaagaactgaatggttttctccaatccccggtggatatagtgtataat
cttgaacaggataaatggtgcggaacagatacactccgcctgaagataattgatatgtca
cccgcaggtaccaagatttaa
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