Dehalococcoides mccartyi CG1: X792_04420
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Entry
X792_04420 CDS
T03647
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dmx
Dehalococcoides mccartyi CG1
Pathway
dmx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X792_04420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmx03019
]
X792_04420
03016 Transfer RNA biogenesis [BR:
dmx03016
]
X792_04420
Enzymes [BR:
dmx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
X792_04420
Messenger RNA biogenesis [BR:
dmx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
X792_04420
Transfer RNA biogenesis [BR:
dmx03016
]
Prokaryotic type
tRNA degradation factors
X792_04420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KhpA-B_KH
KH_2
Alg14
Motif
Other DBs
NCBI-ProteinID:
AII58015
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All DBs
Position
814919..817081
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AA seq
720 aa
AA seq
DB search
MITANSFERTIGGRKLIIESGKMARLADAAVTIRYADTELLVTLCAAKKPREGVDFLPLT
IDYEERMYAAGKIPGGFIRREGRPSEQAILAGRLTDRPLRPLLPKEWRNELQIIITVIAS
DKENDADIWGVVGASTVLAMSEIPYEGPVGASRVGYINGEFVLNPTFAQLEQSQMDLVVV
STRKAVVMIEAGSKEIPEDLMIKAIEFAHQANQELIDLQDEIRAKLGKEKLPVPVLEIPE
EVKAAVAAFVKGRVNEALSHQDKTLRENAVEALQSELVEALAETYAEGDILAAYDKEIKK
AIRSTILEKDIRVNGRGIKQLRQLDAETGILPRVHGSALFTRGDTQVMAVTTLGSLQESQ
QLDGLSAEDTKRFMLHYNFAPFSTGEVKRSGSPGRREIGHGALAERALVPVLPTPEEFPY
TIRMVADVVGSSGSTSMGSVCSSSLSLMDAGVPVKKAVAGISIGLITGENDTYCTITDIE
GIEDNYGDMDFKVAGTRDGITAIQVDMKVKGISFDVIRDAIYQAKEARYTILEVMDKALA
QPKTELSPYAPRMYKISIDPSKIGSVIGSGGKTIRSIIEQTNTTVDIENDGTVVIGATDE
ASAQKAIKIIEDLTKDIEAGSVYTGKVTRIMTFGAFVEILPGKEGMVHISELADHRVEKV
EDIVKVGDEITVKVTEIDSQGRVNLSRRVILNPNAVPISRNRDSQPRRSGPFRPQDRSNS
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
ttgataactgccaactcatttgaacgaactattggcggcagaaaacttattatagagagc
gggaaaatggcccgccttgcagatgccgcagtaactatccgctatgcggataccgaatta
ctggtaacactttgtgctgccaaaaaaccgcgcgaaggggtggatttcctccccctgact
atagactatgaagagcggatgtatgccgcaggcaaaatccccggcgggtttatccgccgc
gaaggacgccccagtgaacaggctattttggctggacgtctaacagacagacctcttcgc
ccccttctccccaaggagtggcggaatgaacttcagattattatcaccgtaattgcctca
gataaggaaaatgacgccgatatctggggtgtagtgggtgcttccactgttcttgccatg
tctgaaataccctacgaaggtccggttggagccagccgcgtaggttatataaacggtgaa
ttcgtgcttaaccccacctttgcccagctggaacaaagccagatggatttggtggtagtc
agcacccgcaaagccgtggttatgattgaagccgggtctaaggaaattcccgaagacctt
atgattaaagcgattgagtttgcccaccaggcaaatcaggagctgattgaccttcaggat
gaaatccgcgccaagctgggcaaggaaaaactgccggtgccggtgctggaaatacctgaa
gaagtcaaagcagcggtagccgcctttgtaaaggggcgggtaaacgaagctctgagccat
caggacaaaaccctccgtgaaaatgcggttgaagcccttcagagcgaactggttgaagct
ttggcagaaacgtacgccgagggcgatattctggctgcttatgataaagaaatcaaaaag
gctatccgctcaactatacttgaaaaagatatcagggtaaacggacggggcattaaacag
cttcgccagctggacgctgaaacaggtattctgccccgcgttcacggctcagctttgttc
acccggggtgatacccaggttatggccgttaccactctgggttctttacaggaatcccag
cagctggatggcttgagtgccgaagataccaagcgttttatgcttcactacaattttgcc
cccttctctaccggtgaagttaagcgttccggctcccccggacggcgtgaaatcggccat
ggtgctttagccgaaagggctttggtgcctgtcctgcccactcccgaagaatttccctat
accattcgtatggtagctgacgtagtcggttcatcaggctctacttctatgggcagtgtc
tgttcgtccagtttgtcacttatggatgcaggtgtacccgttaaaaaagctgttgccggt
atctccatcggccttattaccggtgaaaatgatacctactgcaccattactgatattgaa
ggtattgaagataactacggcgatatggatttcaaagttgccggtacccgtgacggcata
accgccatacaggtggacatgaaggtcaagggtatcagctttgacgttatccgtgacgct
atatatcaggccaaagaagcccgctataccatactggaagtaatggacaaggctcttgcc
cagcccaagaccgagcttagcccttacgcccccagaatgtacaagataagcattgacccc
tccaagattggcagtgttatcggcagcggcggcaagactatccgctctattattgagcag
accaatactaccgttgatattgaaaatgacggcacagtggtcatcggtgctactgacgaa
gcttcggcccaaaaggctatcaagataattgaagacctgactaaagatattgaagccggc
agtgtttacaccggtaaagttacccggataatgaccttcggcgctttcgttgaaatcctg
cccggcaaggagggcatggtacacataagcgaactggctgaccacagagtagaaaaagtg
gaagatatagtcaaggttggtgatgaaataacggtaaaagttaccgagattgattcccaa
ggcagagtaaatttgtcacggcgggtcattctcaaccccaacgccgtacccatttcacgt
aaccgtgattcccagccgcgtcgttccgggcctttccgccctcaagaccggtccaactca
taa
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