Dehalococcoides mccartyi CG4: X793_00845
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Entry
X793_00845 CDS
T03648
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dmy
Dehalococcoides mccartyi CG4
Pathway
dmy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X793_00845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmy03019
]
X793_00845
Enzymes [BR:
dmy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
X793_00845
Messenger RNA biogenesis [BR:
dmy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
X793_00845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Flavi_DEAD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AII58936
LinkDB
All DBs
Position
167257..168942
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AA seq
561 aa
AA seq
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MSFESFNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVI
QKMLSTPRGRVRTLVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRRLRSG
VDVVVACPGRLLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTLL
FSATMPPEVRKLTLETQTNPVTIQIGTQAPASSVSHSVYPVKNHQKTPLLIEILKTTETK
SVLIFARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAA
RGLDIDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMVRDIQKLINS
PIQRLRVDGFDYATTRNDGQNHSQRRGFAPRRGYSAEGYNRSEMPAAETSPNSLTAEMPS
GNVRPFSQAVRSGRPADSAPRFRREGYSAPRFGGRPSFEDAPMTAAKPAARFNARPAFRK
EDDAQTAPKAYPSFGRETGVTSAENTRSVSENQEQFSSRRPARFNGKASFANRPARPGNK
VGKPPFFRRSKPPVSENNPTY
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaatctttcaattttgctccggctgttatggccggggtcagggcttgcggt
tatcaagagcccacccccattcaggcccaggctattccccctattttagaggggcatgat
gttattggtctggcccaaacaggtactggcaaaaccgcggcttatgctttacccgttatc
cagaaaatgctttctacccccagggggcgggtacgtactttggtgctggcgcctaccaga
gagctggcttgccagattgctgagagcttccgctcgctgggtcagcgcgcccgcatccgg
gagtgctctatctatggcggggtgaatatggaccagcaaatccgccgcttacggagcggg
gtagatgtggtagtggcttgccccggcaggcttttagaccatatctggcggggaactatt
gatatttgcggggtggagaccctgattatagacgaggctgaccgcatgtttgatatgggt
ttccagccggatatccagagtattttgaaatgcctggttcagccgcatcagaccctttta
ttttcagccaccatgccgccggaagtccgcaagcttaccctggaaacccagaccaatccg
gtaactatccagattggtactcaggctccggcaagcagtgtcagccacagtgtttatccg
gtgaaaaaccaccagaaaacccctttgctgattgaaattctgaaaacaacggaaaccaag
tctgttttgatatttgcccgcaccaagtacggggcggaaaacctggctgatgaaatatcc
agagccggttttactactgcttcgcttcagggcaatctttcccaaaaccgccgccatgcc
gtcatggaaggcttccgccgggggaattttaaaattctggtggctaccgatattgccgcc
aggggtctggatattgaccatatttcccacgtgataaattatgatatgccggatacccct
gaagattatactcaccgtatcggacggaccgggcgttttgaccgcaccgggcaggccctc
agcctggtgaccgggcgtgatggtgatatggtaagggatattcaaaaactgataaacagc
ccaatccagcgcctccgggttgacgggtttgattatgccaccacccgtaatgacgggcag
aaccattcgcagcgccggggttttgctccccgccggggttattcggctgagggttataac
cgctctgaaatgcctgcagctgaaacttcaccaaatagtcttacggctgaaatgccctca
ggcaatgtcaggccgtttagtcaggctgtccgttccggacgcccggctgattccgccccc
cgtttccgccgtgaagggtactctgccccccgctttggaggacgcccttcgtttgaggat
gcccctatgacggcggctaagccggcagccaggtttaatgcccgtcctgctttcaggaaa
gaggatgacgctcaaactgcgcctaaagcctacccttcatttggcagggaaaccggagtg
acttcggctgaaaatacccggtctgtttctgaaaaccaggagcagttttcaagccgccgt
ccggcccgctttaacggcaaagcttcttttgcaaaccgcccggcccggccggggaataaa
gtgggaaaaccgcccttcttcaggcgctcaaaaccgcctgtttcagagaataacccaact
tattag
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