Dehalococcoides mccartyi CG4: X793_03060
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Entry
X793_03060 CDS
T03648
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
dmy
Dehalococcoides mccartyi CG4
Brite
KEGG Orthology (KO) [BR:
dmy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dmy03032
]
X793_03060
03400 DNA repair and recombination proteins [BR:
dmy03400
]
X793_03060
Enzymes [BR:
dmy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
X793_03060
DNA replication proteins [BR:
dmy03032
]
Prokaryotic type
DNA Topoisomerases
X793_03060
DNA repair and recombination proteins [BR:
dmy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
X793_03060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_Top1
Zn_ribbon_19
Toprim_4
Zn_ribbon_RPB9
DUF2207_C
Toprim_2
Zn_ribbon_3
Zn_ribbon_PaaD
Motif
Other DBs
NCBI-ProteinID:
AII59357
LinkDB
All DBs
Position
complement(582576..584687)
Genome browser
AA seq
703 aa
AA seq
DB search
MKEKLVIVESPAKARTISKMLGKDFNIMATMGHIRDLPKSTLGVDVENSFTPKYVSLKAK
AKVIKELKDAVKNSKAIYLATDPDREGEAIAWHISEVTKANLAKPKRVVFHEITKEAIDK
AFKNTRELDMDLVNAQQARRVLDRLVGYKLSPLLWRKVQRGLSAGRVQSVSLKIIVDRER
EIEKFVSAEYWNIEALLNKKVKSAAFKASLAGYVTKGKLEIHNESEAEQIKKELEVSDYQ
VLKIKKKSNLRQSPAPFITSTLQQEAWRKLHFSAKQTMVIAQQLYEGLNIEGEGEVGLIT
YMRTDSTNVARTAVAETRDYISEKYGQAYLPKQARVFSSKVKGAQEAHEAIRPTRITRTP
DLIKKSLSAEQFKLYQLIWQRMMASQMSPAAFDNTTIDIEAKHQPSKTRYLLKTTSSVNT
FPGFTIVYIEGKDEDEEAAQSSLPPIEEGEELKLKSLEASQHFTQPPPRYTEATLIKALE
QYGIGRPSTYAPTISTIQEREYITKLKGSLKPSELGMLVNDLLVEYFPDIIGIDFTAAME
TELDKIATEKLDWVPIIRRFYEPFIKEIEAASEKIEKIKPPEEELDELCPECNAKLVVKR
GRFGKFIACSRYTKEEGGCRYTRSYQIKTGAKCPECNSDIVEKYSKKGKIFYGCAGYPNC
KFVSFYKPLSKPCPECGALMTKSGKNWAKCTKCGKRKKLEDES
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaaacttgttatcgttgagtcacctgccaaagcccgtactatcagcaaaatg
ctgggcaaagactttaatattatggccaccatggggcatatacgggatttacccaaaagc
accctgggcgtagatgttgaaaacagttttacccccaagtatgtctccttgaaagccaag
gccaaggtcataaaggaactcaaagacgcagttaaaaattccaaggcaatctacctggct
accgaccctgaccgcgaaggtgaggctattgcctggcatatatccgaagttaccaaagcc
aatctggctaagcccaaacgggtggtctttcacgagattaccaaagaagccatagataag
gcttttaaaaacacccgcgaactggatatggatttggtaaatgcccagcaggcccggagg
gtgcttgaccggctggtaggttacaaattaagcccgctgctctggcgaaaggtacaacgg
ggactttcagccggacgggtgcagtctgtttccctgaaaataattgttgaccgcgaacgg
gaaatagaaaaatttgtatctgccgaatactggaatatagaagccctgctgaataaaaag
gttaaatcagccgctttcaaagcttctctggcaggttatgtaaccaaaggcaaactggaa
atacataacgaatctgaagccgaacaaattaaaaaagaactggaagtatctgactatcag
gtactgaagataaaaaagaaatcaaacctcaggcagtcccccgccccctttattaccagc
acccttcagcaggaggcctggcggaagctccatttttcagccaagcaaaccatggtgata
gcccagcagctgtatgaaggcctgaatatagagggcgaaggggaagtgggtcttataacc
tatatgcgtactgattctaccaacgtagcccgtaccgccgtagccgaaacccgtgattat
ataagtgaaaaatacggccaggcttacctgcccaaacaggccagagtattttcaagcaag
gttaagggcgcacaggaagcccatgaagctatccgccctacccgtataacccgcacccct
gacttgataaaaaagagcttgtctgccgaacagttcaaactttaccagcttatctggcag
cgtatgatggccagccagatgagcccggccgcctttgataatactacaatagacatagag
gccaaacaccagccatcaaaaacccgttatctgcttaaaaccaccagttcggtaaatact
tttccgggttttaccattgtatatatagaaggcaaggacgaagatgaagaagcggcgcag
tccagcctgccgcccatagaagaaggcgaagagctgaagctgaaaagcctggaggccagc
cagcactttacccagcctcctccccgttatacagaggctacgctgataaaagcgctggag
caatacggcataggccgccccagcacctacgcccccactatttccacaatacaggaacgg
gaatacattaccaagctcaaaggcagccttaaacccagtgaactgggaatgctggtaaat
gacctgctggtagagtatttcccggatattatcggtatagattttacggccgccatggaa
accgaactggacaaaatagccactgaaaaactggactgggtgcctataatcaggcgtttt
tatgaaccttttataaaagagatagaagccgccagcgaaaaaattgaaaaaattaaaccg
ccggaagaagagctggacgagctttgccccgaatgcaatgccaagctggtagtaaaacgg
gggcgttttggtaaatttattgcctgctcacgttataccaaagaagagggcggctgccgt
tatacccgctcataccagataaaaacaggtgccaaatgccctgagtgcaattcggatata
gttgaaaaatacagcaaaaagggcaagatattttacggctgtgccggttacccgaactgc
aaatttgtatctttctacaagccgctaagcaaaccctgcccggaatgcggcgcccttatg
accaagagcggcaagaactgggccaaatgcaccaagtgcggcaaacgcaaaaaacttgaa
gatgaaagctaa
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