Dehalococcoides mccartyi CG4: X793_04580
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Entry
X793_04580 CDS
T03648
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
dmy
Dehalococcoides mccartyi CG4
Pathway
dmy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X793_04580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmy03019
]
X793_04580
03016 Transfer RNA biogenesis [BR:
dmy03016
]
X793_04580
Enzymes [BR:
dmy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
X793_04580
Messenger RNA biogenesis [BR:
dmy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
X793_04580
Transfer RNA biogenesis [BR:
dmy03016
]
Prokaryotic type
tRNA degradation factors
X793_04580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
KH_KhpA-B
S1_RRP5
OB_RRP5_4th
KH_PNO1_2nd
KH_2
KH-I_KHDC4-BBP
Alg14
Motif
Other DBs
NCBI-ProteinID:
AII59609
LinkDB
All DBs
Position
853176..855338
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AA seq
720 aa
AA seq
DB search
MITANSFERTIGGRKLIIESGKMARLADAAVTIRYADTELLVTLCAAKKPREGVDFLPLT
IDYEERMYAAGKIPGGFIRREGRPSEQAILAGRLTDRPLRPLLPKEWRNELQIIITVIAS
DKENDADIWGVVGASTVLTMSQIPYEGPVGASRVGYINGEFVLNPTFAQLEQSQMDLVVV
STRKAVVMIEAGSKEIPEDLMIKAIEFAHQANQELIDLQDEIRAKLGKEKLPVPVLEIPE
EVKAAVAAFVKGRVNEALSHQDKTLRENAVEALQSELVEALAETYAEGDILAAYDKEIKK
AIRSTILEKDIRVNGRGIKQLRQLDAETGILPRVHGSALFTRGDTQVMAITTLGSLQEAQ
QLDGLSAEDTKRFMLHYNFAPFSTGEVKRSGSPGRREIGHGALAERALVPVLPTPEEFPY
TIRMVADVVGSSGSTSMGSVCSSSLSLMDAGVPVKKAVAGISIGLITGENDTYCTITDIE
GIEDNYGDMDFKVAGTRDGITAIQVDMKVKGISFDVIRDAIYQAKEARYTILEVMDKALA
QPKTELSPYAPRMYKISIDPSKIGSVIGSGGKTIRSIIEQTNTTVDIENDGTVVIGATDE
ASAQKAIKIIEDLTKDVEAGSVYTGKVTRIMTFGAFVEILPGKEGMVHISELADHRVEKV
EDVVKVGDEITVKVTEIDSQGRINLSHRVILNPNAVPISRNRDSQPRRSGPFRPQDRSNS
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
ttgataactgccaactcatttgaacgaactattggcggcagaaaacttattatagagagc
gggaaaatggcccgccttgcagatgccgcagtaactatccgctatgcggataccgaatta
ctggtaacactttgtgctgccaaaaaaccgcgcgaaggggtggatttcctccccctgact
atagactacgaagagcggatgtatgccgcaggcaaaatccctggcgggtttatccgccgc
gaaggacgccccagtgaacaggctattttggccggacgtctgacagacagacctcttcgc
ccccttctccccaaggagtggcggaatgaacttcagattattatcaccgtaattgcctca
gacaaggaaaatgacgctgatatctggggtgtggtaggtgcttcaaccgttcttaccatg
tcgcaaataccctacgaaggtccggtaggagccagccgcgtaggttatataaacggcgaa
ttcgtgctcaaccccacctttgcccagctggaacaaagccagatggatttggtggtagtc
agcacccgcaaagctgtggttatgattgaagccgggtctaaggaaattcccgaagacctt
atgattaaagcgattgagtttgcccaccaggcaaatcaggagcttattgacctgcaggat
gaaatccgcgccaagctgggcaaggaaaaactgccggtgccggtgctggaaatacctgaa
gaagtcaaagcagcggtagccgcctttgtaaaaggacgggtaaacgaagctctgagccat
caggataaaaccctccgtgaaaatgcggttgaagcccttcagagcgaactggttgaagct
ttggcagagacatatgccgagggcgatattctggccgcttatgataaagaaatcaaaaag
gctatccgctcaactatacttgaaaaagatatccgggtaaacggacggggcattaaacag
cttcgccagctggacgctgaaacaggtattctgccccgcgttcacggctcagctttgttc
acccggggtgatacccaggttatggccattaccacactgggttctttgcaggaagcccag
cagctggacggtcttagtgccgaagataccaagcgttttatgcttcactataattttgcc
cccttctctaccggtgaagttaagcgttccggctcccccggacggcgtgaaatcggtcat
ggtgctttagccgaaagggctttggtgcctgtcctgcccactcccgaagaatttccctat
accattcgtatggtagctgacgtagtcggttcatcaggctctacttctatgggcagtgtc
tgctcgtccagtttgtcacttatggatgcaggtgtacccgttaaaaaagctgttgccggt
atctccatcggccttattaccggtgaaaatgacacctactgcaccattactgatattgaa
ggtattgaagataactacggcgatatggatttcaaagttgccggtacccgtgacggcata
accgccatacaggtggacatgaaggtcaagggtatcagctttgacgttatccgtgacgct
atctaccaggccaaagaagcccgctataccatactggaagtaatggacaaggctcttgcc
cagcccaagaccgagcttagcccttacgcccccagaatgtacaagataagcattgacccc
tccaagattggcagtgttatcggcagcggcggcaagactatccgctctattattgagcag
accaataccaccgttgatattgaaaatgacggcacagtggtcatcggcgctactgacgaa
gcttcggcccaaaaagctataaagataattgaagacctgaccaaagatgtagaagccggc
agtgtttataccggtaaagttacccggataatgacctttggtgcttttgttgaaattctg
cccggcaaagagggcatggtacacataagcgaactggccgaccacagagtggaaaaagtg
gaagacgtagttaaagtgggtgacgaaataacagtaaaggtaactgagattgattcgcag
ggcagaataaacctgtcacaccgggtcattctcaatcccaatgctgttcccatctcccgc
aaccgtgattcccagccgcgccgttccgggcctttccgccctcaagaccggtctaactca
taa
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