Dehalococcoides mccartyi CG4: X793_05860
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Entry
X793_05860 CDS
T03648
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dmy
Dehalococcoides mccartyi CG4
Pathway
dmy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
X793_05860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dmy03400
]
X793_05860
Enzymes [BR:
dmy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
X793_05860
DNA repair and recombination proteins [BR:
dmy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
X793_05860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AII59834
LinkDB
All DBs
Position
complement(1083814..1087260)
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AA seq
1148 aa
AA seq
DB search
MNLSGLLPLIDQSPSFNSLFEALDKGEADISVLDAGRGFSLAAVYRKLKCPMLIITSQPE
RARELLVHISAYTGEEPGFLPDPSLLPYQRAVSDRNTSLEKMRLAGILGGFIRSQDAQII
VSAVPALLQRYVSPEIFKQSFLQVWTGLETEPQELIRRFQQLGYRQENIVEIPGTYSRRG
GILDIFPYTEDNPVRLEFFGNTLESLRVFDPQSQRSGKSLNELTISPASELFHLGQLPAK
ELNARLDALLTDNLNPEFSRTLSADIARLKEGLKPEYPDFFAPLFNTSSIFDYLPADALV
VLDEPASIEQAASHLDKEAEELRSDRLSQGELPSVYPRPYFSWEEISAILKTKKRLIMAS
FGRESESLKLDFASQDNYVGRLSALYEKLGELKGYAGRVVIISHQAARLAELLKEHGISA
SVQTDILKPPPPSSLSLVQGIMGGGWNLSGNVHVLTDAELFGFVKGRRLPSKRPSARKSV
VLDIKPGEFVVHIDHGVALFSGVSHLSRDGMDKEYLILNYAGGDKLYVPTDQMDRVSRFI
GSGDEPPSLHRLGTQEWQRAKEKASESAEETARELLDIYAKREMASGYPFSTDTVWQQEM
EASFPYLETPDQLKALYDIKADMENSRPMDRLILGDVGYGKTEVAIRAAFKAVMDGKQVA
VLVPTTVLAQQHYTTFRERLATFPVKIEVLSRFCSPSEQKATVENLEKGEVDICIGTHRL
IQADIKFKDLGLVIIDEEQRFGVAHKEFFKKLRAQVDVLTLSATPIPRTLHMSLVGVRDM
SIIETPPGERLPIKTVVAAFDERLIREAILREMERNGQVFFVNNRVMGINLLAERIQQLV
PEARIGIAHGQMAEEKLAAVMADFVRHELDVLVCTTIIESGVDVPNANTLIINRADRFGL
TQLYQLRGRVGRSSQLAYAYFLYEKDKRLTSDAEKRLKTIYEAAELGAGYGIAMKDLEIR
GAGTLLGVKQSGYINSVGFNLYTQMLSEAVAGLKAKGSGLSKEEIRIQNMPAPKLDLPLD
AFIPEYYIQDLDLRLSIYQQLSAITNLAGVLEKEKELADRFGQIPPELENLLYSLRLRLL
AKKAHVETIVTEGSQIVVRMLGGLIVNKILLEPLRAGVLVGRNQVSVQYKKLGDSWKEAL
EEVVWRLG
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
ttgaatcttagcggtttgctgccccttatagaccaaagcccgtcatttaacagcttgttt
gaagctctggacaagggcgaggctgatatttctgttttggatgcggggcggggtttcagt
ctggcagctgtataccgtaaactcaaatgtcccatgcttattattacctcacagccggag
cgggccagggaattgctggtgcatatatctgcttataccggggaagagccgggatttttg
cctgaccccagtttgctgccgtaccagcgggctgtttctgaccgcaatacctcactggaa
aagatgcgtctggcaggtattctgggcgggtttatccgcagccaagacgcccagataata
gtcagtgccgtgccggctcttcttcagcgttatgtatcaccggaaatattcaagcagtca
tttttgcaggtctggactggtttggaaacagaaccccaggagctgatacgccgttttcag
cagctgggctaccgccaggaaaatattgtggaaataccgggtacatattcccgccggggc
ggcatactggatattttcccctataccgaagataacccggtacggctggagtttttcggc
aatacgctggaaagcctgcgtgtttttgacccccaaagccagcgttcgggcaaaagtctg
aatgaacttaccataagcccggcaagcgagctgtttcatctggggcagctgccagctaag
gaacttaacgccaggctggatgcgttgcttactgataaccttaatcccgaattcagccgc
actttgtccgcagatatcgcccgccttaaggaagggcttaagcccgaataccctgatttt
tttgcccccctgtttaacacctcaagtatatttgattacctgccggcagatgcgctggtg
gtgctggatgagccagcctccatagagcaggcggcctcccatctggataaagaagccgaa
gagctgcgctctgaccgtttgtcacagggtgagctgccttcggtttatccccgcccctat
ttcagctgggaagagatatccgccatattaaaaaccaaaaaacgtcttattatggcctct
ttcgggcgggaaagtgagtctttaaagctggattttgcctctcaggataactacgtgggg
cgtttatccgctttgtatgaaaaactgggggaactgaaagggtatgcaggccgggtagtt
atcatcagccatcaggctgcccgtctggcagagcttctaaaagagcatggtatttcagca
tctgtccaaacagatattttgaaaccccctcccccctccagccttagcttggttcaggga
ataatgggcggtggctggaatctcagcggcaatgttcacgtactcactgatgccgaactg
ttcggctttgtcaaagggcggcgtctgccttccaaacgcccgtctgcccgcaagagcgtg
gtgctggatataaaaccgggtgaatttgtggttcatatagaccacggggtggccttgttc
agcggggtcagccacttaagccgtgacggcatggataaagagtacctgatactcaactat
gccggcggtgacaaactctacgtccccacagaccagatggacagggtaagccgttttata
ggcagcggggatgaaccgccgtctttgcaccgtttgggtactcaggaatggcaaagggct
aaagaaaaggccagcgaatctgcggaggaaaccgcccgtgaactccttgatatttatgcc
aagcgtgaaatggccagcggatacccgttttccacggataccgtctggcagcaggaaatg
gaggcatctttcccgtatctggaaacgcctgaccagctgaaagccctgtatgatatcaag
gcagatatggaaaactcccgccctatggacaggcttatactgggggacgtgggttatggt
aaaaccgaagtagccatacgggcagccttcaaggcggttatggacggcaagcaggtggca
gtcttagtgcctactaccgtgcttgcccagcagcattacaccactttccgtgagcggctg
gctacttttcccgtcaaaatagaggttcttagccgtttttgcagcccctctgaacagaaa
gccacggttgaaaatctggaaaagggtgaggtggatatctgcataggtactcaccgcctg
attcaggctgatataaagtttaaagatttggggctggtcataatagacgaagaacagcgt
ttcggggtagctcacaaggagttttttaagaagctgcgggctcaggtagatgtgcttacc
ctcagcgctacccccatccctcgcactttgcacatgtctttggtgggggtgcgggatatg
agtattatcgaaaccccgcccggtgaacgactgcccatcaaaacggtagtagccgctttt
gatgagaggctgatacgtgaggctatactgcgggagatggaaaggaacgggcaggtattt
tttgtaaataaccgggtgatgggcataaatctgctggcagagcgtattcagcagcttgtc
cccgaagcccgtatcggcattgcccacgggcagatggccgaagaaaaactggccgccgtc
atggctgattttgtgcggcatgagctggatgtgctggtgtgcaccaccattatagagtcc
ggggtggatgtacctaatgccaatacccttattataaaccgggcagaccgcttcgggctt
acccagctttaccagctgcgggggcgggtgggacgcagttcccagctggcttatgcctat
ttcctgtatgaaaaagataaacgcctgacatctgatgccgaaaaacgcctgaaaactatt
tatgaggcagccgagcttggggcaggctacggtattgccatgaaagatttggaaatacgg
ggtgcggggactttgctgggggtaaaacagtccggctatataaattcggtcggtttcaac
ctgtatacccagatgctgtcagaggctgtggccgggctgaaggccaagggcagcgggctt
tccaaagaggaaatacgtatccagaatatgcccgcccccaagctggatttacctttggat
gcctttatacccgaatattatattcaggatttggatttgcgtttatctatttaccagcaa
ttatccgccattaccaatctggcgggagtgttggaaaaggaaaaagagctggcagaccgg
tttggacaaataccgccggagcttgaaaacctgctttattccctccgcctgcgtttgctg
gccaaaaaagcccacgtggagaccatagtgaccgaaggcagccagatagtggtgcggatg
ctgggcggactgatagtaaataaaatcttgcttgagccgctgagggcaggggtgctggta
gggcgtaatcaggtgtctgtccagtataaaaagctgggtgacagttggaaagaagcgctg
gaagaggttgtttggcggctgggctag
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