Dehalococcoides mccartyi CG4: X793_06375
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Entry
X793_06375 CDS
T03648
Name
(GenBank) DNA-directed DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
dmy
Dehalococcoides mccartyi CG4
Pathway
dmy03030
DNA replication
dmy03410
Base excision repair
dmy03420
Nucleotide excision repair
dmy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dmy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
X793_06375
03410 Base excision repair
X793_06375
03420 Nucleotide excision repair
X793_06375
03440 Homologous recombination
X793_06375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dmy03032
]
X793_06375
03400 DNA repair and recombination proteins [BR:
dmy03400
]
X793_06375
Enzymes [BR:
dmy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
X793_06375
DNA replication proteins [BR:
dmy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
X793_06375
DNA repair and recombination proteins [BR:
dmy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
X793_06375
NER (nucleotide excision repair)
GGR (global genome repair) factors
X793_06375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
HHH_5
HHH
RecR_HhH
nSTAND_NTPase4
HHH_2
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
AII59932
LinkDB
All DBs
Position
complement(1173583..1176294)
Genome browser
AA seq
903 aa
AA seq
DB search
MNKPVIVLFDGTNLVHRAYHVLPPLAIRKTGEVVGAAFGFASILIKVLTDLKPDCYAISF
DRKGPTFRHEMFKAYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDVLGTLA
TRAAAAGMEVIIASGDADSMQLVGPDIRILYPGPAGSFASTSLYDEAAVRAKYGLGPEHI
ADYKALMGDPSDNIPGVPGIGPKTAQKLIEEYGGIEDIYKNLDKISPPGLQKKLADNAEV
ARDSKILTTIVRDLPLDFSIEECRAEHYNRQKVVDLFRELEFFRLIDRLPGGENQLQGTP
NMFAVASKVETRYTVADSQNIDSIVSRLANAKELALAVSGTPEEAMDARLTALALSRAAG
DACFVPAEFIGSASEGQMFAAEGHSGLAALLGDEKISKTAHNAKYLMNLLLSAGQEVKGL
DFDTMIAAHLLGEKNLALKDLVFEHFGIEIADVENILTRNGKKASFSEVQLSEAAQLAAD
YTFRLKGIFASQLAETRLMDLFARVEMPLLPILLGMERTGIMLDTDLLKAMAEKTGRQIF
KLEEDIYAQAGHSFNIGSPQQLGRILFDELKLPVIKKTKTGYSTGAEVLEELKGKHRIVD
LILEYRMLVKLKSTYLDTLPRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEM
GREIRRAFIAPPGTVLLAGDYSQIDLRVLAHLSQDPALIEAFQSDQDIHTATAARLLNIP
PSKVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLEEADKFIKAYFEKYPRVAVYFSEI
KQQVRTQGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQGTSADIIKLAMVRLDE
KLKEEKLKSRLLLQVHDELIFEVPTAELGRMSDLLVETMSGAVAFEIPLKVELKSGANWG
DME
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgaataaacctgtaatagtcctctttgacggcactaacctggttcaccgggcatatcat
gtacttcctccgcttgccatccgcaaaacaggtgaagtagtgggtgccgcttttggcttc
gcctctatactgattaaagtcttaacagaccttaaaccggattgttacgccatatccttt
gacagaaaaggcccaaccttccgccatgaaatgttcaaagcatacaaagcccagcgtccg
cccatgcctgacgaactggtcagccagcttgggagggtacgccagattgtagatgctttt
aatatgccggtatacgaacagagcggctttgaggctgatgatgtgctgggtacgctggca
accagagccgctgccgcaggtatggaggttattatagcctccggagacgcagactccatg
cagctggtcgggccggatatccgcattttgtatcccggtccggcaggttcttttgccagc
accagtttgtatgacgaggcggcggtaagggcaaaatacggtttggggccggagcatatt
gcagattacaaagcccttatgggtgacccgtctgacaatatccccggagtacccggcata
ggcccgaaaaccgcccagaaacttatagaagagtacggcggcatagaagatatttataaa
aatctggataaaataagcccgcccggtcttcagaaaaagctggcagataatgccgaagta
gcccgtgacagtaaaatactgactactatcgtgcgtgatttgccgcttgatttcagtatt
gaggaatgccgggcagagcactataaccgccagaaagtggtagacctattccgtgagctg
gagtttttcaggctgattgaccgcctgccgggaggggaaaaccagcttcagggtacgccg
aatatgtttgctgttgcttcaaaggttgaaacccgctatacggtggcagacagccaaaat
atagacagcattgtaagccgcctggcaaatgccaaagagctggcgctggcggtttcgggt
actcccgaagaagctatggatgcccgcctgacggcactggcactttcacgtgcggcgggt
gatgcctgctttgtacccgctgagtttatcggcagtgcttcagaagggcagatgtttgcc
gccgaagggcattccggcttggcagctctgcttggtgatgaaaaaataagtaaaaccgcc
cataacgccaagtaccttatgaatttgcttttatctgccgggcaggaagtaaaagggctg
gattttgataccatgattgccgcccatctgctgggtgaaaaaaatctggctctcaaagac
cttgtctttgagcatttcggcatagagattgcggatgttgaaaatatactgacccgaaac
ggcaaaaaagccagtttcagcgaagttcagctttcagaagcagcccagcttgcggctgat
tacactttccgcctcaaaggtatctttgcctcccaacttgccgaaaccaggctgatggat
ttatttgccagggtggaaatgccccttttgcctattctgctgggcatggaacgcaccggc
attatgctggatacagatttgctgaaggctatggctgaaaagacaggcaggcagatattt
aaactggaagaagatatctatgcccaggctgggcatagctttaacataggctccccccag
cagctggggcggatactctttgacgaactgaaactgccggttatcaaaaagaccaaaacc
ggctattccaccggggcagaggtgcttgaagaactgaagggcaagcaccgtattgtagac
ctgatactggaataccgtatgctggtaaagctgaaatctacttatctggataccctgccg
cgtatggtaaacccgcatacccggcggctgcataccagtttcaaccagacccgtacagct
accggcaggttatcttcttccgagcctaatctgcaaaacatacctgtcaggggcgaaatg
ggcagggaaatacggcgggcatttattgcgcctccaggcacagtgctgctggcgggagac
tattcccaaatagacctcagggtgctggcccatctttcccaagaccccgccctgatagag
gctttccaaagtgaccaggatattcacaccgctaccgccgccagattgctgaacattccc
ccgtcaaaggtgactaaagagcaacgccgcttggctaaaaccgtaaatttcggggtgata
tacggcatgagtagctatgggttggaacaggctaccgagctttcgctggaagaagccgac
aaatttataaaagcctattttgaaaaatatccgcgggtggctgtttatttctcggagatt
aagcagcaggtgcgtactcagggttatgtggaaaccctgctgggcagacgccgctatata
ccggaaatcaattcacccaaccgtattctgcgtgaatcagccgagcgtatggctatcaat
atgccggtacaggggacatctgctgacattatcaagctggctatggtccggctggacgaa
aagcttaaagaagaaaagctgaaaagccgcctgcttcttcaggtgcatgacgagcttata
tttgaagtacccacagcagagcttgggcggatgagtgatttgcttgtagaaaccatgtca
ggtgcagttgcctttgaaataccgcttaaggttgagcttaagtccggggctaactgggga
gatatggagtaa
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