Dehalococcoides mccartyi CG5: X794_00775
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Entry
X794_00775 CDS
T03649
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dmz
Dehalococcoides mccartyi CG5
Pathway
dmz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X794_00775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmz03019
]
X794_00775
Enzymes [BR:
dmz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
X794_00775
Messenger RNA biogenesis [BR:
dmz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
X794_00775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AII60382
LinkDB
All DBs
Position
151114..152799
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AA seq
561 aa
AA seq
DB search
MSFESFNFDPAVMAGVRACGYKEPTPIQAQAIPPIMAGHDVIGLAQTGTGKTAAYALPII
QKMLSTPRGRVRTLVIAPTRELACQISDSFRSLGQRARIRECSIYGGVNMDQQIRRLRSG
VDVVVACPGRLLDHIWRGTIDVCGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQTLL
FSATMPPEVRKLTLETQTNPVTVQVGTQSPVSSVSHSVYPVKSHQKTPLLLEILKTVETK
SVLIFARTKYGAENLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAA
RGLDIDHISHVINYDMPDSPEDYTHRIGRTGRFDRTGQAFSLVTGRDGDMVRDIQRLLSS
PIQRLRVDGFDYATTRNDGQNQSQRRDFAPRRGYSHGGYNRPEMAVNETSQTDTPSEMPV
SPARPFNPGFRPSRPANSAPRFHREGNFAPRMQSHSSFEGTSAPAARPAARYNDRPAFRK
ENSFQTTEASRPSFRKETGFTPREHTQADFENSEQPSGRRPARFNGKASFADRPARSGNK
VGKPPFFRRSKPAVSEKNETY
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaatctttcaattttgatccggctgttatggctggagtcagggcctgcggc
tataaagagcccacccccattcaggcacaggctattccccccattatggctggacatgat
gttatcggtctggctcagaccggcaccggtaaaaccgctgcttatgccttgcccattatt
caaaaaatgctttctacccccaggggacgggtgcgtactctggtaattgcacccaccagg
gaactggcttgccagatttctgatagttttcgttcacttggccagcgcgcccgtatacgg
gagtgctccatttacggcggagtgaatatggaccagcaaattcgccgcttacggagcggt
gtagacgtagtagtggcttgccccggcaggcttctggatcacatatggcggggaactatt
gatgtctgcggggtggaaaccctgataatagacgaagctgaccgcatgtttgacatgggt
ttccagccggatatccagagcattttgaagtgtctggttcagccgcatcaaaccctttta
ttttcggcaaccatgccgccggaagtccgcaagcttactctggaaactcagaccaatccg
gtaactgtacaggttggtacccagtctccggtaagcagtgtcagccatagtgtttatccg
gtgaaaagtcaccagaaaaccccgttactgcttgaaatattgaaaacggtagaaaccaag
tcagttctgatatttgcccgcaccaaatatggagcggaaaatctggctgatgaaatatcc
aaggccgggtttactacagcctcccttcagggcaatctttcccaaaaccgccgtcatgcc
gttatggaagggttccgccgcgggaatttcaaaattctggtagctaccgatattgccgcc
agaggtttggatattgaccatatatcccatgtaataaattacgatatgccggattccccg
gaagactatactcaccgtattggccggacaggacgctttgaccgcacaggacaggctttc
agtctggtaaccggacgtgacggggatatggtaagagatatccagaggcttttaagcagc
cccattcagcgtctgcgggttgacgggtttgattatgctacgacccgcaatgatggacag
aaccagtcacagcgcagggattttgcaccccgccggggttattcccatggcggttataat
cgccctgaaatggctgtaaatgaaacttcacaaacggatactccgtctgaaatgccggta
agccccgcaaggccttttaatcccggtttccggcccagccgtccggcaaattctgctccc
cgtttccacagggaggggaactttgccccccgtatgcagagccactcttcttttgagggt
acctctgccccagcggccagacctgcagcccggtataatgaccgtcctgcttttagaaaa
gaaaacagttttcaaactaccgaggcgtcacggccttcttttaggaaggaaacagggttt
actccccgtgagcatactcaggctgattttgaaaatagcgaacagccttcaggcaggcgt
cctgcccggtttaacgggaaagcttcttttgcagaccgcccggcacgttcggggaataaa
gtggggaaaccgcccttctttaggcgttcaaaaccagctgtttcagagaaaaacgaaact
tactag
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