Dehalococcoides mccartyi CG5: X794_01615
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Entry
X794_01615 CDS
T03649
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dmz
Dehalococcoides mccartyi CG5
Pathway
dmz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dmz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X794_01615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dmz03019
]
X794_01615
Messenger RNA biogenesis [BR:
dmz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
X794_01615
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AII60541
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Position
313213..314868
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AA seq
551 aa
AA seq
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MAKPKLKIVPLGGLGEIGKNMMSVEYGEDIILIDCGLMFPEEEMLGIDLVIPDISYVLEN
REKVRGIVITHGHEDHIGALPYILPQINVPIYCTKLTQGLISVKLKEAKLLHQTKINVIP
SDGTFKLGKLKVDFYPVCHSLPDSVGLVIQTPIGAVVHSGDFKLDYTPVDGKPTNLSRLA
MLGSRGVLLLMSDSTHVELPGYTPSETVVGENIDRIIGAATGRVLVTTFASLISRQQQVI
DAAAKYGRKLFFAGRSMTEIHKMATDLGYLKVPEGLVCNIEQLQRVPPEKVVLMTTGSQG
EPTSALVRIANRDFRHVHIMKGDTVIISASPIPGNESLVSRTIDSLFRQGAKVFYDRIAK
VHVHGHASQEELKLVLNLVNPKYFVPVHGEYRHLTMHAELARTMGVAPENAFVMEDGDIL
ELNTKSGRITGKVPSGNVYVDGLSVGDVGGVVLRNRRMLSQDGIVVAIVAINKQTGMLVG
RPDIVSRGFVDPDESKAMLDASRDLIIKLLDHDGKDIPEGAMYNDVKETLNKFYYEQTKR
RPMVIPVMVKV
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacctaaacttaagattgtacctctgggtggcctgggtgagataggcaagaat
atgatgtctgtagaatatggggaagacatcatcctgatagactgcgggcttatgttcccc
gaagaagaaatgctgggtatagatttggtaatacccgacatttcatatgtactggaaaac
cgtgaaaaagtacggggtattgtaattacccacggacatgaagaccatataggggcgtta
ccctatatacttccccagataaatgtacctatttattgtactaaacttacccaagggctt
atttcggtaaagctgaaggaagccaaactgctccaccagaccaagataaatgttatcccg
tctgacggtactttcaagctgggtaaactcaaagtagacttctatccggtctgccacagt
ctgccggattcggtggggctggttatccagacgcctatcggggcggtagtccacagcggt
gatttcaaactggactatacgccggtagacggcaaacctaccaatctgtcacgtttggct
atgctgggctcgcgtggagtactgcttttgatgtcagactccacccatgtggaactgccc
ggttataccccctcggaaactgtggtgggcgaaaatattgaccgtattatcggggcggct
acggggcgggtactggttaccacctttgcttcgcttatttcccgccagcagcaggttatt
gatgccgctgccaaatacgggcgcaagctcttttttgccggccgcagtatgactgaaatt
cataaaatggctaccgatttgggctaccttaaagtgcctgaaggtctggtatgcaatata
gagcagcttcagcgtgtacccccggagaaagtggttttgatgactaccggttctcagggt
gaacctacctctgcccttgttcgtatagccaaccgtgatttccgccatgtccacataatg
aaaggggataccgtaattatttcggcgtcccccatacccggcaatgaatcactggtaagc
cgtactatagacagccttttccgccaaggggctaaagtgttttatgaccgcatagccaaa
gtacatgtacacgggcatgccagtcaggaagaactgaagctggtactcaatctggtcaac
cccaagtactttgtgcccgtgcatggcgaataccgccacctgaccatgcatgccgagctt
gcccggactatgggtgttgctccggaaaatgcctttgtcatggaagacggggatatactg
gagttaaataccaagtccggtcgtattacgggcaaagtcccgtccggcaatgtctacgta
gatggtttgagtgtgggtgatgtgggcggggtggtactccgcaaccgccgtatgctttca
caggacggtatcgtagtggcaattgtggctattaacaagcaaaccggtatgctggtgggc
aggccggatattgtttccaggggatttgttgatcctgatgaatctaaagctatgctggat
gccagtcgtgaccttataatcaagctgcttgaccatgacggtaaggatattcccgagggg
gctatgtataatgatgttaaagaaacgctgaacaagttttactacgagcagactaaacgg
cgtcccatggttatcccggttatggtaaaagtgtag
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